Detail information of 3_circ_ag.3


General Information
CircRNA Name 3_circ_ag.3
ID in PlantcircBase ath_circ_026984
Alias NA
Organism Arabidpsis thaliana
Position chr3: 19155976-19160924  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G51460_circ_g.1 AT3G51460_circ_g.2 AT3G51460_circ_g.3 AT3G51460_circ_g.4 AT3G51460_circ_g.5 AT3G51460_circ_g.6 AT3G51460_circ_g.7 AT3G51460_circ_g.8 AT3G51460_circ_g.9 AT3G51460_circ_g.10 3_circ_ag.11 AT3G51460_circ_g.12 AT3G51460_circ_g.13 AT3G51480_circ_g.1 AT3G51510_circ_g.1 AT3G51510_circ_g.2 AT3G51510_circ_g.3 AT3G51520_circ_g.1 AT3G51530_circ_g.1 AT3G51550_circ_g.1 AT3G51550_circ_g.2 AT3G51550_circ_g.3 AT3G51550_circ_g.4 AT3G51550_circ_g.5 AT3G51550_circ_g.6 AT3G51620_circ_g.1 AT3G51620_circ_g.2 AT3G51630_circ_g.1 3_circ_ag.2 3_circ_ag.4 AT3G51670_circ_g.1 AT3G51670_circ_g.2 AT3G51710_circ_g.1 AT3G51730_circ_g.1 AT3G51730_circ_g.2 AT3G51730_circ_g.3 AT3G51730_circ_g.4 AT3G51730_circ_g.5 AT3G51730_circ_g.6 AT3G51730_circ_g.7 AT3G51730_circ_g.8 AT3G51740_circ_g.1 AT3G51740_circ_g.2 AT3G51770_circ_g.1 AT3G51770_circ_g.2 AT3G51800_circ_g.1 AT3G51800_circ_g.2 AT3G51800_circ_g.3 AT3G51800_circ_g.4 AT3G51800_circ_g.5 AT3G51810_circ_g.1 AT3G51810_circ_g.2 AT3G51820_circ_g.1 AT3G51820_circ_g.2 AT3G51820_circ_g.3 AT3G51820_circ_g.4 AT3G51820_circ_g.5 AT3G51820_circ_g.6 AT3G51820_circ_g.7 AT3G51820_circ_g.8 AT3G51820_circ_g.9 AT3G51820_circ_g.10 AT3G51820_circ_g.11 AT3G51820_circ_g.12 AT3G51830_circ_g.1 AT3G51830_circ_g.2 AT3G51830_circ_g.3 AT3G51830_circ_g.4 AT3G51830_circ_g.5 AT3G51830_circ_g.6 AT3G51830_circ_g.7 AT3G51830_circ_g.8 AT3G51830_circ_g.9 AT3G51830_circ_g.10 AT3G51830_circ_g.11 AT3G51830_circ_g.12
Support reads 6
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTCTCATACCTATGCTCATTCTAGTCATATTAATCCTCCTGACTTCGTGGCTATGAAATCT
GTCCCTAATGAAGAGGAGAGGAACACTAATAATCCAgttgtttctgagccaaaaccgagtagag
aacctaaaaaatcatggcaccaactgtttgctcgttcaactcctgctcctgtttcctcaaatgt
taatacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGTTTCTGAGCCAAAACCGAGTAGAGAACCTAAAAAATCATGGCACCAACTGTTTGCTCGTT
CAACTCCTGCTCCTGTTTCCTCAAATGTTAATACTATAAGTAGACCTAGCACGAATCCCCAGCC
AAATGTTCAGAGCTCACAGGTTCCCAGTCAAGTTTCCTCAATACGAACCTTTGACAATCCCATC
AGTTTTGGGCTCCCATCGCCATTCACCATACCGGTGTACTCTAGTGGATCCACTACCAGTAGTT
TAGGTTTCTCACCTCCAACAGAACTTGTTTTTCCTCAACCCGGTGAAGATGAGCGTTTTGAAGA
TCCATGTTATGTTCCGGATCCGATATCTCTACTGGGACCTGTTTCAGAATCACTTGATTTAAGA
GCTGCTGGGTATGAAACTGGCATAGGACAGGTAAAATACCAGGCGATGAAGAATACACCTTCTT
GTGAAGCCAACAAGCCATCTCCAATTGAGTCTCCCTTGTCTAGATCACGGGCTGCGGATGAAAA
ACAAGCTAATGATGGAAGCTGGCAAATGTGGAAGAGTCCTCTAGGCCAAAACGGTCTTGGTTTA
GTTGGTGGGTCAGCAAACTGGGTTATACCTTCCGAAATAAGTAGATCTATCGAGGAAAGTGATA
TGCATCACGCGCCTCAGCATAGAACAGAATCATTATTTTCAAAAGAGGATTGCCAGCTTCATCA
AGGTGCTTATTCACAAAGGAAGGACTATCTTGAACATGATCAGAGAAGTGGCGTTTTCAGCCCC
ATTACTGGTCCAACCACTACTGATCCTTGGTCTCAGAAAATGTTCTTCCCTGCATTATCTGGTA
TTGAGAGTCCTTTTTCTACTACCACACAAACAAAAAGCGTCTTGAACAATGCGGCAGGGTACAG
AAGTCCAACGGGATCTGGTTCAGACAATCCATTTGAACATCCTTCTCCTAATCACTGGCTCAAG
TAAGTCCTGAAAACTTGTTGTTTCTGTAGTTTTCTGAGATGGCAAGACAAAGTGTAAATCTTGA
AAAGAAGCAGTAATGATTTGGTAGAATTTGTGAATGTACAGGAAGGTGAAGAGCTCAGGGAATG
GGAGTGGGAAGCAAGTTTTAGCGGCCGGTGAAGTTGAGAACCACCAAAAAGATGTAGAATCATT
CTGGTAGTCACAAAATTAAACAAAATGAGGTCAAATTTTTTGCAGATACACACACGTTGACTGT
GTCTGTCTGTCTCTGTCTTTTGTCCTCTCGGGTCTTCAATGGAGATATAGAGATAATTTAGATT
ACATTTTATGCATTTACCATTACAGTGATAACTTAATATTCAAATAAATAATAAGAATTAAAGT
ATATTTCTAATCTTGATACGACGAAAGTTGTTTATCATCTCGTATCAAACGTAGAGGCAGTTGA
ACAATTTAACAAACGAAAATGTTCTTAGATTGGTATAACCATTCGTCGAAAACTATAAAGATTT
ACTTTTATTTAACCATAAGATGATATCATCTATCAAAAAGTGTTAATTATAGTTGATCATATAT
AATAAGAACAAATTATAAAGGCTATATACAAAGGAAATTTGCGTTAATTAGGTTATCTAACCGC
ATGCATCCAAAACAAATCATGTATTTAAAAACTTGATCACAACTTGAGCAAAATATATGGAGAG
CAAAGGGCCATCGCCAATAGTTCCACTTGTGCTTGTGGTACTCTTCGGATGGTTCCTATGCGGC
TCGTACCTTGTCTCACTATTAGAAGATGTTGTATTACCAATCTTACAAACCGGAACGTTCATTG
TAGGAATCTTTCTCTTGCTTCTCCTTTTGCTTCTCCATGTCTTATCTTCTTCTTGGATCTATCC
ATGGATCCCTTCTCTTTTTCTTTTACCATCTCCGGCTTCCACCACTTCTACTGACTCCGACAGC
TTTGGCCTTGGATCCTTTCTTTTGCTCACACTTTTTTTCATCTCCTTCTGGTTGTTTCAGTCAG
TGTAATTAATGTATATTCTTCTTGTACACAAATAGTTTCTCTCATTGGAATTTGTATTTTCCTG
ATTGTTCATGCAAGATATTATTATACACTTTTTTACATCTTATAGGAAAGACCACTTGATAAAT
CATGCAAGATTCCAACATATAATGTTTTTCTTTTTGTAATGTTTAAATAATTAATTACTGCATC
ACTCATATTTCATTTTGCTTGTAAAGAAACTGAATACAACATATATATATCATCTGTGAAAACA
AGATATAAGAAAAAGAAGTAGGGGTGAAACAAATCAAACACAATAAAAAAACCTAGCTAGCTAG
CTAGGATCGGAGTTGCATAATAATGAGTCGATAGAAGATGTTATATAAGTCTCCGTGCAACCAC
CTTTCACGACCAACCAGCACGAAGGACATGAAATGAAAGCAACAACATGACACAGAGGGAAGAT
CACATGCATTGCCTTGGGTTTTAGATTCAAATTTTAGGGTCAGATTTTGAGTACTGTAATATGT
GTGTTTAAATAAGGTAAAAACTATAAGAAATTTTTTTAAGAAACTTCTTACTTGATTTATCATT
TTTTCCAATATTTTTGTGAAGATGTACCAAACATATCCAAGAAAATAATTTCACCAATCTGGTA
GATAATGAATGATTCGATATAGTATGTATGTGCTATAAAAACTTTTATCAATGCTTAAACTTAA
AATAGCTTTGACCATATCTAAACTATGTTATAAAATAACTTTTAAAATATTCTTTTTTTAAAAA
AATTCTTAAAATGTTTTATATGTTATTTGAACATTTCTTTGAAATGCCCATTATTAGTCCATTA
GCCCAACAAACCGTTGGATATATGGGTGGGGCGGCGTTTAAGAGGCACTGACTTGACCCGACTA
CCCACCCGGTTCGTTCCTTGGTTCCGGTTTTGCCTTGTAAACATTTTCTTTCGTTTTTCTTCAT
CATCTTCTTCTCAAATCTTTCGCGTTTACGGTTTCTTCGTTAGCAGGATTCGAACGAAAGCCAC
GAGACTACGTGATTCAACCCGAATACGATCCGAATCAGGATTCTCCTTCCATCATCTTCCATCC
CCAATTTCAAAGCTCTTCTCTTTTTGGCTGATGCTTTGCTTCAATGGCCTCTCTATCGGTAAGT
CTCCTCTTACCTTCTCTCGATTAATTCACATTGCACAACAAGTCAATCTGAACTCTGCGTACAA
GGGTTCATCGATTTCTATTTGTAGAACGTTGTGGTTCGTCTAATTTGATTCCATTGTTGTTGCT
ACATAGGTATGTTGCTATAACAATCTTTAACTACAGTTGCTTAGAGCTGGAGACTTGTTAACTT
CGATGGTGTATAACCTTAAAATAAGATTAGGGTTTGGGTTTTCTGCTGCGACTACATCCTCTGG
GTTGAAATTTCTCTGAGTTTAGGGTTTTCTGATACATTTGGTTTGATAAGAAGAAGAAAAGGTG
TTGCCTTTTGGAGGATAATGTGTATATTGTGCGTTATACAAAAGTGGTCTCGTCAGGTTGCAAC
GATGCTACCTTGGTTTGTCATACCTTTGATTGGACTATGGGCTCTCTCTCAGCTTCTTCCACCA
GCTTTTCGTTTTGAGATTACTTCTCCCAGGCTTGCTTGTGTATTTGTGCTCTTGGTTACTTTGT
TCTGGTACGAGGTTTTGATGCCTCAGCTCTCTACTTGGCGGGTACGTAGAAATGCCCAACTTAG
GGAGAGAGAAAGATTAGAAGCTATTGAATTGCAAAAGTTGAAGAAAAATGCCACAAGGCGTTGT
CGTAACTGCTCAAATCCTTACAGGGACCAAAATCCAGGTGGTGGGAAATTTATGTGTTCGTATT
GTGGACATGTATCAAAACGGCCTGTTTTAGACATGGCCTTGTCTTCCGGATTAGAGATTTCTGG
TTCAGGGATTTTGAAGGATCTTGTTGGAAGAGGTGGAAAGATGTTGAATGGGAAGGGATGGAGT
GAGAATGGATATTTGCACAGGCAAGAGTGGTCTGACAACAGCACATGGACTAGCGGGTCAAGCT
ATTGGCGGAATAATAGTGGCGATACGTTTGAAGGAGATGAAAATTGTTTGGTGGAGAAATCATA
TTCTGGTGGTGTTGTTTTTGCTTGCAGGTTGTTGACTTCTTTTTTCATGAGCATTTTGTGGCTT
TGGAGAAAGATATTTAGATTTAGCTCATCAGTTGGTGATTCATCACTTGACCCTGAGCAGAGGC
GGATGTTGGCTAGGCAGGGTGAGAACGGGACAAGCAGTCATGAAAGTAGGGTAGAAAAGGCACG
TAGAAAAGCAGAGGAGAAAAGACAAGCTAGGCTAGAGAAGGAGCATTCAGAGGAGGAAGAGAGA
AAACAAAGAGAGGAAGTAGCAAGATTAGTAGAGGAACGGAGAAGGCTGAGAGATGAGATACTTG
AGGCCGAGAAATGCAGCAAATTTTCAGTGGCTGCTAAGGAGAAAGACACTAAGGAGGCAGAAAA
GAAACGTCAGGAGAGAAGAAAAGAGAGAGATAGGGCCTCAAGTAAGAGCAATTCTGATGGTGAA
GAGGTTGACAAGAGAACAAGAAAGGAAACCGAGCAGAAGCGCGGGCTTAATAAGAGCGATCATC
TGGAACATGAGAGGCACGCACCTGATAATTTAAGGGGCCCCAACATGGAAAGGAGACATGGACA
TGGTTTAGAGAATAATGTCACTAGTAACGGTACAAAATCTGGTGGTAGGTACTTTGATCGAATG
AAGAGTACAACTTTTTCTTCTTCAAAGGCTTTTACTGATAGTCGTATATTTGGGAGAGGTGTTA
ATACTTCTGCTACATTTGCAAGAGAAAACAAGCCAACTGGTTCTGCAGATAATTCTCATACCTA
TGCTCATTCTAGTCATATTAATCCTCCTGACTTCGTGGCTATGAAATCTGTCCCTAATGAAGAG
GAGAGGAACACTAATAATCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.812862863
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017