Detail information of Os06g0705300_circ_g.3


General Information
CircRNA Name Os06g0705300_circ_g.3
ID in PlantcircBase osa_circ_032256
Alias NA
Organism Oryza sativa
Position chr6: 29799307-29799635  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0705300
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os06t070530
0-01);Similar to plant-specific domain TIGR01589 family protein.
(Os06t0705300-02)
Parent gene strand -
Alternative splicing Os06g0705300_circ_g.2 Os06g0705300_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTATACACTCACTTAAACAATGGGGTATTGCATTACTACTCCAGTTATGCTCATATCAGTC
ATTGCTAGAAGCTTAAGTCTGAAAAAAATGCCTTACtattaaaatgaaacaaccccgtaagagg
acagtctgtactcaactaaatgcctagccctgcaaacaaagaaaataaagaatggaaagtaaag
gcaagcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATTAAAATGAAACAACCCCGTAAGAGGACAGTCTGTACTCAACTAAATGCCTAGCCCTGCAAA
CAAAGAAAATAAAGAATGGAAAGTAAAGGCAAGCAAATATCTTTCTCTTGAGCAACCGTGTTGT
GCTCACCTAATAAACACAAACTTCCTGAGCTTACACTTGGAAAAGATCATTTTCAGAAACATTA
AATTCTTCAGGCTCCCAAAGAACTAATTATTTGTTCACCATTATACACTCACTTAAACAATGGG
GTATTGCATTACTACTCCAGTTATGCTCATATCAGTCATTGCTAGAAGCTTAAGTCTGAAAAAA
ATGCCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.130974975
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017