Detail information of Os04g0118900_circ_g.3


General Information
CircRNA Name Os04g0118900_circ_g.3
ID in PlantcircBase osa_circ_022933
Alias NA
Organism Oryza sativa
Position chr4: 1123107-1123597  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0118900
Parent gene annotation Similar to Arginine/serine-rich splicing factor 1 variant 2. (Os
04t0118900-01)
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0118900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGAAAGCCTGCGCCTCCCAGGGCCAAAAGGATAGCCATCAAGGGCTCGTATGGCCTCATCAC
CATCACGCTCATCCTCAAAGTAGACAAAAGCAAATCgtagaatgagtagcttcaagtgcttttg
tggcctcttcctgtgtttcaaactgcacaaaagcaaagttcctcctgatccgaacattcgaaag
ctttccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGAATGAGTAGCTTCAAGTGCTTTTGTGGCCTCTTCCTGTGTTTCAAACTGCACAAAAGCAA
AGTTCCTCCTGATCCGAACATTCGAAAGCTTTCCAAATGGTTCGAAATGCCTTTCGATATCAGT
GACTCTGGTGTTGATGGGGTCAAAGTTAATGACAAATAGTGTCTTCGTGGGTTTAGTATTCACA
GGTGGTTTGCTATAGCCATCACGCCTGGAACCACGATCACCCTGTAATAAAGGCCATAATAACG
AATGCAATACTTTGACATTAAAGACCGACTAAATTAAACAACAAAACTCTCAACATGTAAGTAA
AACATGTTTCAATTTTTTCAGGGTTATAGGTGGTGACAAGAACAGCAAGAGAAATTACCCGTGA
CCACTCCACCGAAAGCCTGCGCCTCCCAGGGCCAAAAGGATAGCCATCAAGGGCTCGTATGGCC
TCATCACCATCACGCTCATCCTCAAAGTAGACAAAAGCAAATC
Conservation Information
Conserved circRNAs osi_circ_014222
PMCS 0.189992719
Functional Information
Coding potential Y
Potential coding position 1123193-1123578(-)
Potential amino acid sequence MFGSGGTLLLCSLKHRKRPQKHLKLLILRFAFVYFEDERDGDEAIRALDGYPFGPGRRRLSVEW
SRGDRGSRRDGYSKPPVNTKPTKTLFVINFDPINTRVTDIERHFEPFGKLSNVRIRRNFAFVQF
ETQEEATKALEATHSTICFCLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017