Plant Circular RNA Database

Detail information of Os02g0232500_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os02g0232500_circ_g.5
					
						ID in PlantcircBase
						osa_circ_013995
					
						Alias
						Os_ciR5314
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 7505763-7507629  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0232500						
					
						Parent gene annotation
						
							Similar to Receptor-like serine/threonine kinase. (Os02t0232500-
01);Similar to Receptor-like serine/threonine kinase. (Os02t0232
500-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0232500_circ_g.1 Os02g0232500_circ_g.2 Os02g0232500_circ_g.3 Os02g0232500_circ_g.4 Os02g0232500_circ_g.6 Os02g0232500_circ_g.7 						
					
						Support reads
						3/2
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0232500-01:7
Os02t0232500-02:7

General Information
CircRNA Name	Os02g0232500_circ_g.5
ID in PlantcircBase	osa_circ_013995
Alias	Os_ciR5314
Organism	Oryza sativa
Position	chr2: 7505763-7507629 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0232500
Parent gene annotation	Similar to Receptor-like serine/threonine kinase. (Os02t0232500- 01);Similar to Receptor-like serine/threonine kinase. (Os02t0232 500-02)
Parent gene strand	+
Alternative splicing	Os02g0232500_circ_g.1 Os02g0232500_circ_g.2 Os02g0232500_circ_g.3 Os02g0232500_circ_g.4 Os02g0232500_circ_g.6 Os02g0232500_circ_g.7
Support reads	3/2
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0232500-01:7 Os02t0232500-02:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTGATATGTTCTTGGATAACAACTGATGAATGCTTGCAGGGATGTGTCGTTTAATAACTTCAC
GGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTccgaattgacgggaccaatatctcagga
agaatacccagtttcataaaaaattggcaacgggtcaacagaatgttagtttcactctgatgta
gaacattt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 504
Transcript exons: 7505763-7505834,7505945-7506016,7506109-7506180,7506588-
7506659,7507115-7507192,7507337-7507414,7507570-7507629
CCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTC
AACAGAATAGACATGCAGGGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGA
ACAACTTAACAGAACTGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACA
AAATGCACAGCACCTTACAAAAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCT
TACCTTGGACAGATGCAGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAA
TTCCACAAAATTTTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACAT
GCTGACTGGAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGAT
GTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGT
						
					

						Genomic sequence
						
							CCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTC
AACAGAATGTTAGTTTCACTCTGATGTAGAACATTTCACGAGTTGCAGTTGAAATGGATGAAAA
TGACTTTTGTTCAATGTTCTAATTTCGTTTAAATCTTCTCTCTTGATTTTTCAGAGACATGCAG
GGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGT
ATGAATGTTTCATACCTATGCTTTATTATTTTACCACTGAGTCACAACTGATGTTTTTAACAAT
ATATCTTGTAACCATTACATAATCAGGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTC
CTCCCTTACAAAATGCACAGCACCTTACAAAAGTGTAAGTTTATCTTTCAGTGATTTTTACTAG
CTTACATTAGTACTTCCAGCAGAGAACGGCATTGTAGCCCGGTGGTATGGGAGCTTCCAGGTGC
TCTTGCTGGGCAGAGTTCGAGTCCCTCCTCAGCTCTGGTTTTCTCACCATTTCTTCTCTCTTAA
TAATTGATGCTAAGTTCCTTCTTAGTATCCCACATTGAGTGTCCGTTCAAAAACACTAGTACTT
CCAGCACAATATGGAATTCTCACCATTTCTTGTTCAAAAACACTAGTACTTCCAGCACAATATG
AAATTCTCACCATTTCTTCTCTCTTAAAAATTGATGCTAAGTTCCATCTTAGTATCCTTTTGGG
TGTTTGTTCAAAAACATTAGTACTTCCAGCACAATATTAAATTCTCTTATGTTACAGGGTCCTA
AGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGCAGTATCTAATACTCA
TGTAAGTATCCAGCCATTATTTTGCTTCAACCATTACCTTTTAGAGTGAACTTTCTTGTTCATA
TGGTTATGGTTTTTCTGTTTGCATCATCATGGGTGAGACGAGAAAAGTCAGTTGTTAGAATTGG
AAATGTCATGGTTTATTATTCTAATATGAAATATGGGTGTCTTTTACTGCATGCGTTGGACAAG
GGTGTCTTTTACCATTATCTATTTCACTTGTTTTTGTTGCACTATTAGGGGGTAATAGTATTAA
GGGGTAATCTTGGCATAACCTATTGTCTCCTTTTACACTGAATGCTGATAATTACAAATACTTG
TTTCTCTGACATGCTAACTCATTCTCTACTATAGGATGTTGTATAAGTTTTACTGTTCATTGAA
GCTAACATATGTGGCCACACAAAGCCCTGGTGTTTTGCTCAATGCCATGATTACAATCTGTATT
AATTTCAGGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATTTTGACAGAATGG
TGGCACTACAACTACAATATTTGTGAGATTAAATCCTTGAGATTTTACTTTATGTGTCAACATT
TTTTGTTTGATTTTGGACAAAATAAAGTGTAGAATTCTCTCCAACATTGGTGGTTTTGTTTATT
GCTTTTGGAAGGCGCCTCATTTCAATTACTATAAATAGGTACTTAAGTGACAACATGCTGACTG
GAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGTGCGTATGCTA
TAATGCAATACTCTTCTGTGCACATACATATATGCTCTCTACTGGTCACTCTTGTTTACTTTTT
ATAGAATGAAAATCAGTTGTATATGTCACTTTCTGTTTTGGTGATATGTTCTTGGATAACAACT
GATGAATGCTTGCAGGGATGTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAA
CAAGCAAACGT
						
					

			
		

Sequences
Splice junction sequence	GGTGATATGTTCTTGGATAACAACTGATGAATGCTTGCAGGGATGTGTCGTTTAATAACTTCAC GGGTAACCCTCCAAATGAATGTCAACAAGCAAACGTccgaattgacgggaccaatatctcagga agaatacccagtttcataaaaaattggcaacgggtcaacagaatgttagtttcactctgatgta gaacattt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 504 Transcript exons: 7505763-7505834,7505945-7506016,7506109-7506180,7506588- 7506659,7507115-7507192,7507337-7507414,7507570-7507629 CCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTC AACAGAATAGACATGCAGGGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGA ACAACTTAACAGAACTGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTCCTCCCTTACA AAATGCACAGCACCTTACAAAAGTGGTCCTAAGAAACTGCTCCATATATGGTGAAATACCACCT TACCTTGGACAGATGCAGTATCTAATACTCATGGATCTAAGCTTCAACAAGTTGACTGGTCAAA TTCCACAAAATTTTGACAGAATGGTGGCACTACAACTACAATATTTGTACTTAAGTGACAACAT GCTGACTGGAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGGAT GTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAACAAGCAAACGT
Genomic sequence	CCGAATTGACGGGACCAATATCTCAGGAAGAATACCCAGTTTCATAAAAAATTGGCAACGGGTC AACAGAATGTTAGTTTCACTCTGATGTAGAACATTTCACGAGTTGCAGTTGAAATGGATGAAAA TGACTTTTGTTCAATGTTCTAATTTCGTTTAAATCTTCTCTCTTGATTTTTCAGAGACATGCAG GGTACCTTGATGAGTGGGCCTATTCCTCCAGAAATTTCTTTGTTGAACAACTTAACAGAACTGT ATGAATGTTTCATACCTATGCTTTATTATTTTACCACTGAGTCACAACTGATGTTTTTAACAAT ATATCTTGTAACCATTACATAATCAGGAGAGTGACTGATTTGAGTGGACCGAGCATGAAATTTC CTCCCTTACAAAATGCACAGCACCTTACAAAAGTGTAAGTTTATCTTTCAGTGATTTTTACTAG CTTACATTAGTACTTCCAGCAGAGAACGGCATTGTAGCCCGGTGGTATGGGAGCTTCCAGGTGC TCTTGCTGGGCAGAGTTCGAGTCCCTCCTCAGCTCTGGTTTTCTCACCATTTCTTCTCTCTTAA TAATTGATGCTAAGTTCCTTCTTAGTATCCCACATTGAGTGTCCGTTCAAAAACACTAGTACTT CCAGCACAATATGGAATTCTCACCATTTCTTGTTCAAAAACACTAGTACTTCCAGCACAATATG AAATTCTCACCATTTCTTCTCTCTTAAAAATTGATGCTAAGTTCCATCTTAGTATCCTTTTGGG TGTTTGTTCAAAAACATTAGTACTTCCAGCACAATATTAAATTCTCTTATGTTACAGGGTCCTA AGAAACTGCTCCATATATGGTGAAATACCACCTTACCTTGGACAGATGCAGTATCTAATACTCA TGTAAGTATCCAGCCATTATTTTGCTTCAACCATTACCTTTTAGAGTGAACTTTCTTGTTCATA TGGTTATGGTTTTTCTGTTTGCATCATCATGGGTGAGACGAGAAAAGTCAGTTGTTAGAATTGG AAATGTCATGGTTTATTATTCTAATATGAAATATGGGTGTCTTTTACTGCATGCGTTGGACAAG GGTGTCTTTTACCATTATCTATTTCACTTGTTTTTGTTGCACTATTAGGGGGTAATAGTATTAA GGGGTAATCTTGGCATAACCTATTGTCTCCTTTTACACTGAATGCTGATAATTACAAATACTTG TTTCTCTGACATGCTAACTCATTCTCTACTATAGGATGTTGTATAAGTTTTACTGTTCATTGAA GCTAACATATGTGGCCACACAAAGCCCTGGTGTTTTGCTCAATGCCATGATTACAATCTGTATT AATTTCAGGGATCTAAGCTTCAACAAGTTGACTGGTCAAATTCCACAAAATTTTGACAGAATGG TGGCACTACAACTACAATATTTGTGAGATTAAATCCTTGAGATTTTACTTTATGTGTCAACATT TTTTGTTTGATTTTGGACAAAATAAAGTGTAGAATTCTCTCCAACATTGGTGGTTTTGTTTATT GCTTTTGGAAGGCGCCTCATTTCAATTACTATAAATAGGTACTTAAGTGACAACATGCTGACTG GAGATTTGCCTGGTTGGATGTTGAAAAACAAGGCAAGCAACAAAGTAAACATGTGCGTATGCTA TAATGCAATACTCTTCTGTGCACATACATATATGCTCTCTACTGGTCACTCTTGTTTACTTTTT ATAGAATGAAAATCAGTTGTATATGTCACTTTCTGTTTTGGTGATATGTTCTTGGATAACAACT GATGAATGCTTGCAGGGATGTGTCGTTTAATAACTTCACGGGTAACCCTCCAAATGAATGTCAA CAAGCAAACGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012752 						
					
						PMCS
						0.213007262

Conservation Information
Conserved circRNAs	osi_circ_012752
PMCS	0.213007262

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							7505950-7507626(+)
7507573-7505806(+)
7506610-7507617(-)
						
						Potential amino acid sequence
						
							MQGTLMSGPIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQ
MQYLILMDLSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFN
NFTGNPPNECQQANVRIDGTNISGRIPSFIKNWQRVNRIDMQGTLMSGPIPPEISLLNNLTELR
VTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQMQYLILMDLSFNKLTGQIPQNFDR
MVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFNNFTGNPPNECQQANVRIDGTNISG
RIPSFIKNWQRVNRIDMQGTLMSGPIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVV
LRNCSIYGEIPPYLGQMQYLILMDLSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWM
LKNKASNKVNMDVSFNNFTGNPPNECQQANVRIDGTNISGRIPSFIKNWQRVNRIDMQGTLMSG
PIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQMQYLILMD
LSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFNNFTGNPPN
ECQQAN(+)
MCRLITSRVTLQMNVNKQTSELTGPISQEEYPVS*(+)
MEQFLRTTFVRCCAFCKGGNFMLGPLKSVTLSSVKLFNKEISGGIGPLIKVPCMSILLTRCQFF
MKLGILPEILVPSIRTFAC*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	7505950-7507626(+) 7507573-7505806(+) 7506610-7507617(-)
Potential amino acid sequence	MQGTLMSGPIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQ MQYLILMDLSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFN NFTGNPPNECQQANVRIDGTNISGRIPSFIKNWQRVNRIDMQGTLMSGPIPPEISLLNNLTELR VTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQMQYLILMDLSFNKLTGQIPQNFDR MVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFNNFTGNPPNECQQANVRIDGTNISG RIPSFIKNWQRVNRIDMQGTLMSGPIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVV LRNCSIYGEIPPYLGQMQYLILMDLSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWM LKNKASNKVNMDVSFNNFTGNPPNECQQANVRIDGTNISGRIPSFIKNWQRVNRIDMQGTLMSG PIPPEISLLNNLTELRVTDLSGPSMKFPPLQNAQHLTKVVLRNCSIYGEIPPYLGQMQYLILMD LSFNKLTGQIPQNFDRMVALQLQYLYLSDNMLTGDLPGWMLKNKASNKVNMDVSFNNFTGNPPN ECQQAN(+) MCRLITSRVTLQMNVNKQTSELTGPISQEEYPVS(+) MEQFLRTTFVRCCAFCKGGNFMLGPLKSVTLSSVKLFNKEISGGIGPLIKVPCMSILLTRCQFF MKLGILPEILVPSIRTFAC(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0232500_circ_g.5

Address

Any questions?

Supported by