Detail information of BGIOSGA032247_circ_g.3


General Information
CircRNA Name BGIOSGA032247_circ_g.3
ID in PlantcircBase osi_circ_008809
Alias Chr10:5563219_5563920(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3956980-3957681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA032247
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA032247-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAAGATGAAAGAATTACCTTCAGGTTGTGGTACACTTCAACACCCATCTTCATGGCCTCCTT
GAATGAAGCGGCCCCAGTAGGAAGGATCATGAACTCcctcctccttgaagttaaggtcataggt
tttgtccttgtcattgtagaattccgaagcagcaacatccattccaatgacaacctaccatatc
aggttgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCTCCTTGAAGTTAAGGTCATAGGTTTTGTCCTTGTCATTGTAGAATTCCGAAGCAGCAAC
ATCCATTCCAATGACAACCTACCATATCAGGTTGCAAAAAAAGTCTCAAGCCTCAGTCAATCAA
AAACATTAACTTATGCAGAAAGATAAACAATAAATTAATCAAAGTACACAAACCTTGCCAGTGT
ATCCAGCCTTTTCAATTGCAGTCTTCAAGAGCTCAAGACCCTCCTTGTTTTCCTGCAATATCAC
ACAACACAAACGATTCAAACCACATGCTAAGTATATTCATTTAGATTTCTAATTACGGATTAGC
TTCATACATCAAAACAGAAGTTATCTCAGCATCTAACATCAAGCAAATACAAAGCAAAACAGGG
AAACATAATTGAAGTGAAGCACTTCACATGGATCAACAGCATAGTGGAAAGAAAGATAATTGAA
TTCACTGCTGCAGGCATAAGTACCTGAATGTTAGGAGCAAAACCACCTTCATCACCAACATTGG
TGGCATCCTGACCATACTTCTTCTTGATAACAGACTGTACAGATAAAATTAATTAATTTTCAAT
GACGTAAGATGGGGAAAAGGTTTAAAATGAAGATGAAAGAATTACCTTCAGGTTGTGGTACACT
TCAACACCCATCTTCATGGCCTCCTTGAATGAAGCGGCCCCAGTAGGAAGGATCATGAACTC
Conservation Information
Conserved circRNAs osa_circ_006281
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021