Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d047912_circ_g.3 |
ID in PlantcircBase | zma_circ_010065 |
Alias | Zm09circ00068, GRMZM2G101001_C1 |
Organism | Zea mays |
Position | chr9: 145086011-145086320 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d047912 |
Parent gene annotation |
Translation initiation factor IF-2 |
Parent gene strand | - |
Alternative splicing | Zm00001d047912_circ_g.1 Zm00001d047912_circ_g.2 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d047912_T003:2 Zm00001d047912_T001:2 Zm00001d047912_T002:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.230541061 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
145086027-145086317(+) 145086088-145086317(+) 145086270-145086066(+) 145086050-145086084(-) |
Potential amino acid sequence |
MLLPWQTIHFPLFLNLLSLYNGQGQLCLFFDTHSFLPFLVLLEIFQIFIFNFFNLGCLGITSSS TCTFLLRRWFFRRIMLLPWQTIHFPLFLNLLSLYNGQGQLCLFFDTHSFLPFLVLLEIFQIFIF NFFNLGCLGITSSSTCTFLLRRWFFRRIMLLPWQTIHFPLFLNLLSLYNGQGQLCLFFDTHSFL PFLVLLEIFQIFIFNFFNLGCLGITSSSTCTFLLRRWFFRRIMLLPWQTIHFPLFLNLLSLYNG QGQLCLFFDTHSFLPFLVLLEIFQIFIFNFFNLGCLGITSSSTCTFLLRRW(+) MAKANFASSLTPTRFFLFLSSLRSSKSSSLIFLTLDVLALLPAAPALFFCAVGSSGGSCFCPGK PYTFLSFLTFSPFTMAKANFASSLTPTRFFLFLSSLRSSKSSSLIFLTLDVLALLPAAPALFFC AVGSSGGSCFCPGKPYTFLSFLTFSPFTMAKANFASSLTPTRFFLFLSSLRSSKSSSLIFLTLD VLALLPAAPALFFCAVGSSGGSCFCPGKPYTFLSFLTFSPFTMAKANFASSLTPTRFFLFLSSL RSSKSSSLIFLTLDVLALLPAAPALFFCAV(+) MSWHYFQQHLHFSSAPLVLQEDHASALANHTLSSLS*(+) MVCQGRSMILLKNQRRRRKVQVLLEVMPRHPRLKKLKMKIWKISRRTRKGRNEWVSKKRQSWPW PL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020;Zhang et al., 2019 |