Plant Circular RNA Database

Detail information of orai.007G250200_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G250200_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000757
					
						Alias
						Chr07:39369187|39370756
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 39369187-39370756  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G250200						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G250200.3:5
Gorai.007G250200.4:4
Gorai.007G250200.1:5
Gorai.007G250200.2:5

General Information
CircRNA Name	orai.007G250200_circ_g.1
ID in PlantcircBase	gra_circ_000757
Alias	Chr07:39369187\|39370756
Organism	Gossypium raimondii
Position	chrChr07: 39369187-39370756 JBrowse»
Reference genome	Graimondii_221
Type	ue-circRNA
Identification method	CIRI
Parent gene	Gorai.007G250200
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G250200.3:5 Gorai.007G250200.4:4 Gorai.007G250200.1:5 Gorai.007G250200.2:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACAGATTCAACCCCTGTTTCCACAACC
TTCCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAGgggttagggaataatacaggtgactata
agaagttggagttcaccttgcaagagtatggagtgcccaccgttgttgctaaggtttcaagaat
tgattggc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 636
Transcript exons: 39369187-39369359,39369458-39369510,39369612-39369726,39
370019-39370141,39370585-39370756
GGGTTAGGGAATAATACAGGTGACTATAAGAAGTTGGAGTTCACCTTGCAAGAGTATGGAGTGC
CCACCGTTGTTGCTAAGGTTTCAAGAATTGATTGGCTGAGGAATGCAGCTGGCTTGGTGGACCC
TAACTACTGGAAAGGCACTTTGCAGCCTAGGCCTGTTCTCGACTGGTATTTGAAGAGGGTTGAT
GATGCAGTTCAAGAAGCAGAGGAATTGGCACAAGGTGGGAAATTGTCAGTGATTGGCCACTCAG
CTGGAGGGTGGCTAGCTCGTGTTTACATGGAAGAATTTGGACTCTCCCACATCTCCTTGCTTCT
CACTCTTGGTACTCCCCACTTGCCTCCTCCGAAAGGTTTGCCAGGGGTCATTGATCAAACAAGG
GGCCTACTATATTATGTTCAACAACACTGCAAAAAAGCCGTTTATACTCCTGAGTTGAAATATG
TATGCATTGCAGGGAGGTATCTTCAGGGGGCTCGTTTTGTTAACGACTCAAAAGTGGCAGTTGA
GTCTATGGCCACCATTGATGATGACCAACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACA
GATTCAACCCCTGTTTCCACAACCTTCCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAG
						
					

						Genomic sequence
						
							GGGTTAGGGAATAATACAGGTGACTATAAGAAGTTGGAGTTCACCTTGCAAGAGTATGGAGTGC
CCACCGTTGTTGCTAAGGTTTCAAGAATTGATTGGCTGAGGAATGCAGCTGGCTTGGTGGACCC
TAACTACTGGAAAGGCACTTTGCAGCCTAGGCCTGTTCTCGACTGGTATTTATCTCAAGATCCC
TTTCAATTTAAACAATGCAGAACGTATGCAAGTTGTAACATAGAAATTTGGTTAATGATTAGAT
ATTGTGTGAAAGCAGGTATTTGAAGAGGGTTGATGATGCAGTTCAAGAAGCAGAGGAATTGGCA
CAAGGTATCAATCTTTGCCATTACCTTTCAGTTATGTTACTCTGACTCGAATGCAAATATTATA
TACAAATATGCGTCTAAACCTATAAAAGCATGTGATTGTAGGTGGGAAATTGTCAGTGATTGGC
CACTCAGCTGGAGGGTGGCTAGCTCGTGTTTACATGGAAGAATTTGGACTCTCCCACATCTCCT
TGCTTCTCACTCTTGGTACTCCCCACTTGTAGGTCTTTTATTTCAATACTAAACTATTTTTTCT
CTCGGAAACTTTTGTTTGTTCAAATGATTTTAGTATTTTTTTTTTAGTTTCTTTTCGATATTTG
GCGGACCATAACCCTTTAAATATGTATCGTATTGGAAAAATGAGAAGTAGAGGGTGATTGGATG
GTCAACTGCTGTAATCCCATTTGCGAGCACTGGCTTTTCCTTTCTTTTGTAATCATTCAACCTC
CAAATGAGTGAAGGGGAGAAGAGTGCTTAAAAGTCTTATCTATGTATTTTGGTCTATTTTGCAG
GCCTCCTCCGAAAGGTTTGCCAGGGGTCATTGATCAAACAAGGGGCCTACTATATTATGTTCAA
CAACACTGCAAAAAAGCCGTTTATACTCCTGAGTTGAAATATGTATGCATTGCAGGGAGGTAAA
ATCAAACTCAGATCCTGTTCCTGTTTCTGCATTAGTTCTACTTCACTCTATTCAAGTTGCCAAA
TACCTTTTTCATTCTACTCGTTCACATGTTGCTCCAACTCCTAATTTTTCTTGAATTTCTTGTC
TGACACATACGCGGACAATAACGTATAGGAAGATGATACTCAAAAAACCTTCCAAATACATGAA
CAGTCAACTCTTCCAACATATTTTAAGGGACAACCTATCATTCTTCTGCAAAACTTGTGCAGAA
TCTAAATTGAAACATATGACATTATTTTATGGATTTGGATCCCTTAAAGTTGATGATTCACATA
AAACCTTGCACATTACTCAGTTGCTTAATATGAGAACTTTGGATAAGACAGGGATTAGTGAAGC
AGAAAATTGCTGTCTGGGGTATTGTTCTTATTTAATTGTCACATTCAAGTGCAGGTATCTTCAG
GGGGCTCGTTTTGTTAACGACTCAAAAGTGGCAGTTGAGTCTATGGCCACCATTGATGATGACC
AACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACAGATTCAACCCCTGTTTCCACAACCTT
CCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAG
						
					

			
		

Sequences
Splice junction sequence	CCAACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACAGATTCAACCCCTGTTTCCACAACC TTCCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAGgggttagggaataatacaggtgactata agaagttggagttcaccttgcaagagtatggagtgcccaccgttgttgctaaggtttcaagaat tgattggc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 636 Transcript exons: 39369187-39369359,39369458-39369510,39369612-39369726,39 370019-39370141,39370585-39370756 GGGTTAGGGAATAATACAGGTGACTATAAGAAGTTGGAGTTCACCTTGCAAGAGTATGGAGTGC CCACCGTTGTTGCTAAGGTTTCAAGAATTGATTGGCTGAGGAATGCAGCTGGCTTGGTGGACCC TAACTACTGGAAAGGCACTTTGCAGCCTAGGCCTGTTCTCGACTGGTATTTGAAGAGGGTTGAT GATGCAGTTCAAGAAGCAGAGGAATTGGCACAAGGTGGGAAATTGTCAGTGATTGGCCACTCAG CTGGAGGGTGGCTAGCTCGTGTTTACATGGAAGAATTTGGACTCTCCCACATCTCCTTGCTTCT CACTCTTGGTACTCCCCACTTGCCTCCTCCGAAAGGTTTGCCAGGGGTCATTGATCAAACAAGG GGCCTACTATATTATGTTCAACAACACTGCAAAAAAGCCGTTTATACTCCTGAGTTGAAATATG TATGCATTGCAGGGAGGTATCTTCAGGGGGCTCGTTTTGTTAACGACTCAAAAGTGGCAGTTGA GTCTATGGCCACCATTGATGATGACCAACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACA GATTCAACCCCTGTTTCCACAACCTTCCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAG
Genomic sequence	GGGTTAGGGAATAATACAGGTGACTATAAGAAGTTGGAGTTCACCTTGCAAGAGTATGGAGTGC CCACCGTTGTTGCTAAGGTTTCAAGAATTGATTGGCTGAGGAATGCAGCTGGCTTGGTGGACCC TAACTACTGGAAAGGCACTTTGCAGCCTAGGCCTGTTCTCGACTGGTATTTATCTCAAGATCCC TTTCAATTTAAACAATGCAGAACGTATGCAAGTTGTAACATAGAAATTTGGTTAATGATTAGAT ATTGTGTGAAAGCAGGTATTTGAAGAGGGTTGATGATGCAGTTCAAGAAGCAGAGGAATTGGCA CAAGGTATCAATCTTTGCCATTACCTTTCAGTTATGTTACTCTGACTCGAATGCAAATATTATA TACAAATATGCGTCTAAACCTATAAAAGCATGTGATTGTAGGTGGGAAATTGTCAGTGATTGGC CACTCAGCTGGAGGGTGGCTAGCTCGTGTTTACATGGAAGAATTTGGACTCTCCCACATCTCCT TGCTTCTCACTCTTGGTACTCCCCACTTGTAGGTCTTTTATTTCAATACTAAACTATTTTTTCT CTCGGAAACTTTTGTTTGTTCAAATGATTTTAGTATTTTTTTTTTAGTTTCTTTTCGATATTTG GCGGACCATAACCCTTTAAATATGTATCGTATTGGAAAAATGAGAAGTAGAGGGTGATTGGATG GTCAACTGCTGTAATCCCATTTGCGAGCACTGGCTTTTCCTTTCTTTTGTAATCATTCAACCTC CAAATGAGTGAAGGGGAGAAGAGTGCTTAAAAGTCTTATCTATGTATTTTGGTCTATTTTGCAG GCCTCCTCCGAAAGGTTTGCCAGGGGTCATTGATCAAACAAGGGGCCTACTATATTATGTTCAA CAACACTGCAAAAAAGCCGTTTATACTCCTGAGTTGAAATATGTATGCATTGCAGGGAGGTAAA ATCAAACTCAGATCCTGTTCCTGTTTCTGCATTAGTTCTACTTCACTCTATTCAAGTTGCCAAA TACCTTTTTCATTCTACTCGTTCACATGTTGCTCCAACTCCTAATTTTTCTTGAATTTCTTGTC TGACACATACGCGGACAATAACGTATAGGAAGATGATACTCAAAAAACCTTCCAAATACATGAA CAGTCAACTCTTCCAACATATTTTAAGGGACAACCTATCATTCTTCTGCAAAACTTGTGCAGAA TCTAAATTGAAACATATGACATTATTTTATGGATTTGGATCCCTTAAAGTTGATGATTCACATA AAACCTTGCACATTACTCAGTTGCTTAATATGAGAACTTTGGATAAGACAGGGATTAGTGAAGC AGAAAATTGCTGTCTGGGGTATTGTTCTTATTTAATTGTCACATTCAAGTGCAGGTATCTTCAG GGGGCTCGTTTTGTTAACGACTCAAAAGTGGCAGTTGAGTCTATGGCCACCATTGATGATGACC AACAAGTATCAGATGTTGCTGTTGTGAAAAATAAGACAGATTCAACCCCTGTTTCCACAACCTT CCAAGCTCGGTTTGTTGGCCAAGGGTACAAACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.447399289

Conservation Information
Conserved circRNAs	NA
PMCS	0.447399289

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							39370637-39370116(+)
						
						Potential amino acid sequence
						
							MATIDDDQQVSDVAVVKNKTDSTPVSTTFQARFVGQGYKQGLGNNTGDYKKLEFTLQEYGVPTV
VAKVSRIDWLRNAAGLVDPNYWKGTLQPRPVLDWYLKRVDDAVQEAEELAQGGKLSVIGHSAGG
WLARVYMEEFGLSHISLLLTLGLLRKVCQGSLIKQGAYYIMFNNTAKKPFILLS*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	39370637-39370116(+)
Potential amino acid sequence	MATIDDDQQVSDVAVVKNKTDSTPVSTTFQARFVGQGYKQGLGNNTGDYKKLEFTLQEYGVPTV VAKVSRIDWLRNAAGLVDPNYWKGTLQPRPVLDWYLKRVDDAVQEAEELAQGGKLSVIGHSAGG WLARVYMEEFGLSHISLLLTLGLLRKVCQGSLIKQGAYYIMFNNTAKKPFILLS*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G250200_circ_g.1

Address

Any questions?

Supported by