Detail information of BGIOSGA002193_circ_g.2


General Information
CircRNA Name BGIOSGA002193_circ_g.2
ID in PlantcircBase osi_circ_011350
Alias Chr01:5250824_5255309(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 5708316-5712801  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA002193
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002194_circ_igg.1 BGIOSGA002194_circ_g.1 BGIOSGA002194_circ_igg.2 BGIOSGA002194_circ_ag.1 BGIOSGA002194_circ_g.2 BGIOSGA002194_circ_g.3 BGIOSGA002194_circ_igg.4 BGIOSGA002194_circ_ag.5 BGIOSGA002194_circ_ag.6 BGIOSGA002194_circ_g.7 BGIOSGA002194_circ_ag.8 BGIOSGA002194_circ_g.9 BGIOSGA002194_circ_ag.10 BGIOSGA002194_circ_g.11 BGIOSGA002194_circ_g.12 BGIOSGA002194_circ_ag.13 BGIOSGA002193_circ_igg.1 BGIOSGA002193_circ_igg.2 BGIOSGA002193_circ_igg.3 BGIOSGA002193_circ_igg.4 BGIOSGA002193_circ_igg.5 BGIOSGA002193_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA002193-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTCGCTACTATATGTTGCCTTCAAGACATGTATATCACCAGGATGTAAGCCAGGATATTTA
TACACAAGAACATCTCCAGAAACTTGGCCATAATCActggttggttgaacattatcagatcgca
gcggttttggatcacctgctttatcatagatttttccaagtatggacgacgaatggtacgaagg
actgcggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGTTGGTTGAACATTATCAGATCGCAGCGGTTTTGGATCACCTGCTTTATCATAGATTTTTC
CAAGTATGGACGACGAATGGTACGAAGGACTGCGGTCCATGAAGTGGGGGTATTGTTTTACCAT
TAGATCACGTGGAATATTGACCTGTCGGGATTGGTGGGCAAAGCTTAAATTGTTAAAGCACAAT
ATGCATTCAATACCCTCACATTACAAAGCTTCAAATAACTAAAGATGCAATTGCACATTTCATT
TTGTATCTTGTAATTTTACTTAATCTGACTGCTTCATATGTCAAATGCATTCATGTGGCCATGC
ATCTGTACATATAAAAAGTAATATATAAGAACCAAATATGAAATACCAACGAGTTATTCCCATA
ACTAAGCATGGTACATCCATTCTTAAATCACGCTAATATACCGAGAGTTAACACATATGGTTAA
AAGTTCACACAACCACAATCAAGACGCAACTAATGGAACAAAGAATCATCATGTTATGGTATAT
TAATTTAATAAAAGAGTGACTTCATAACTATGTACATCAAGACCAGTGTAGTGTATCCACAGCA
GATAGCAACATTCAGGTGCATATGACTGATTTTGCTATAATTTTGTAGTACTTACTACCAGAAT
AGAATATAATAGCAACTAATAACCTTCACACGCACTACCCAATAGCATATATGGATTGAATTGG
ATAGGCTGACTTGTCAGCACATTCCTCAGTATGATTTCATAAGTAGTTCAGTTCATATGTTGAC
ATGTATATAAGAATAGTCCAATTGATTTCACTCCAAACTTAATCAAGGTGTTATTAACTAATTA
TTACTACAAGGTCTTGGTTCAATTTGTTTCCTTCTTTCCGGTGTTTATCAAAATACCAGATGAA
AGCATAAGTTAATAAGGATTTCAGTTCCATGTAAAAGCATTTGCAACAAACAATGTGTAAGCCC
AAGATTGAAGTTAACCTTGTTCCCCATCTTTGGAGCATCCAAAGCCAAATAATAAAGGTCAACT
AACTTGAGCATCTTTTTCTCAATTAGTTTCTTTTCACTTTCGTCAAGTGAAACAGTTAATAGCC
GATCCATATATACTAACCAGTTAGTAGCTGCCGTAGCACGCGCATAACTGAAAGGAGAAAAAAG
AAATCCAAACTCATGTTAGATCGTACAAAACTTATAAGGTTGTATATATTAAAAAGCTACAGAA
AATTGTCACCAACATTAGATATTTAAAAATGTACTAATCGGATTCATACAAAAAGATACCCAAG
CACTTGTAGTTATAAAAATATTGAATTCGGTCAAGGGATCATCATTGGCGCATGGGAGGACATC
CATTGAAGTATTGAACACCTCAATAAGTTGTATATACTAGAAGTTAAATGAGGTAAATTTCTTT
ACAGTAGAGAAATGGTTTCCTAATGAAAAATATACATTAGAAAAACTGAGCTTGGTATTAATAC
CTAGGTGCAAATCTTGTTTTCAAGAACTCATGAAATAGCACTCTTTCAAGCTCGGATTCATTAA
AATCCTCGGGTCCCTTTTGCTTGGTCCCATTTGGTGTAATAGCTGGAACCCATGGTTTCGAAGG
TTTAAAATGTTCTAACAGCTGAAAAGACCATTTTTATTATCAGAGCAGCAATAATCTTTGAAAA
GCTCAAAAGAGAGAATGTGCTGTTATATATCAAAACCATATACATGCAAGAATAATAAGCAAAC
ATATAGTGAAACAATGCAAAGACACAATGAAACAGCGATGCACAATTTTGCAACAAAAAGCAAA
CATGGCATAACTAAAAAAACAGCTACCCTAGGACCCTATCTACCTTAAGATGGCTATGGATCCA
CCCAAATGGGCGTTCAAAGCTATTATAAGAAAAGCAGAGGATTTCTTTGGAAAGGACAGGATAA
AGCAACTGTCTTTTGTCTTGGGAACATGTTTGCCGGCCAATACAGTATTGTGGTCTTGACATAC
ATAACCTAGAAAGGCTTCAAATAATTGATTCTTCTAGACCATGGGTCAGCTTGCCTATCCAAGT
ATCTCACAAGTCACAATGTTCATGCGCTCTTCTACGTAGCTACGGAAACTATAATTGGTAATGG
GGAGAACACCAAGTTCTGGACTGATATATGGCTGCGCAAAACATTGGCTGAATTGGACCCTAAC
CTTCTTGAGACAATTCCCCGAAGAGTAAGGAAGCAACGCACTGTGGCAAAGGAATTGGTTAATA
GGATATGGGTGGCTGATATTAAAGAACTCACAATTCAGGTTATTTGTGAGTATCTACATATTTG
GGACTTGGTGGATGGGATAATCTTGCAACAAGATGTTCTGGATGAGCATAGATAGAAGCTTACA
AGTTCTACACAAGTAAGTCGCATACAATGCTTACTTATTAATCAAGTTTGCAACTTGGGAGCGA
ATTTAGAGAAGTTGGGTTCCTCCACAACATAATTTTTCCTTGTGATTGGCAGTCGACAATCGAT
GTTCGACATCAGACCGTCTAGCCAAGTGTGGCTTACCACACCTGGCCTATGTCATCAAGAGGAT
GAAACCATGAAGCATATTCTTGTCTCATGTGTCTTTTCCAGGAAAAGTATGGACCTTGATCTTA
AACTGGGATTGGTGGATGCGGCCCCTCAGCCTTTCAGTATCCCATTTTTCAGGATGGTGGTGGA
AGGTTGTCAAGGAGATTCCTAAGGAGCAGCGTAAGGGGTTGAACTCGTTGATTATCGTAGTAGA
TTGGGAGATTTGGAAAGACCAGAATGATTACATGTTCAATGGATCAAGTCCTCTGTAGGTTGTG
AGTCCACCACCACAACCGAGGCTAGTTTGTGGTGTCTAGCTGGAGAGCATGCGCTCCAAGAGTT
CCTCTGTAGGTTGCTTGCCTCGGGCAGCTAGGTTGTCCTTGAAGGTGTGGTCGTGCGTCACCTT
CCGTGGTGTGTTTTTTGTGGGAGGGTTTTCGTAAACCCTCGTTTGTAACTTGTAAGTGTGTTAT
ACTTCTTCTTAATGAAATGGATTTTTTTTCTCTCCTGCGTTTACGAGAAAATATTTTCCCAAGT
GAACTTTACTGGTCTTAAACACCACCCTGAACTTCAAAACCAATCACCTTTCAAGTTCACCCCA
AATGCAGACCTGTTTTGGCAACATGACGATGTCACCCAAGGCCGAACCAATTTTAAACTGACTT
AGTAAACTATTTCAAAACGTTCTGGAAACCTCTAACCAGTACAGTGGACCTAGATAAAGTATAA
CTGGCCCTTCAAAAATAATGTTAAAAAATAAATACCTACAAATTTATATAAATGTTCGACTAAT
TTATCCAAGTTTTCAATACTCCCAACAACCAATCAAAAAGAAAATTTAAGTCATTTAGTTATCA
TAAAAAATTCAAAAACCATTTATACCTGGTGTATATTTTTTAACATTCAGAATCAGAAAACACC
TGAATCAGTTCTGGAAAATTCTCAATAATATTATGGTGTATATATAGCCTAGAAAATTTAGTAC
GAGAAAAATAAAGTATAAGCATCTGGAAAAAGGTGTGTTCAAAACTAAATAAGCCAATTTTCAT
TTCACTGACTAAAATATACTCTGTTTCACTTGAGACTAACTATACTCCAAGGTGCGACTAAAGA
ATTTGTCCATATTTTTTATGTCAACTCACTAATTCCAAAAATTCAAAAATAATTTCAACCTTGG
CCCTTACTGCCACCTTAATGAATGTCATGTAAAAACAATCCGATTCAGGCTAAGGTATAAAGTG
AATGATTTTGATCGTCCAGATTTTGAATAGTGTCTACTTTTGAGGTTTGAGGTTAATGTTGTAA
AACAAGCCTTTTCCTCATTAAAACCTAAGCATACTAATAACTGAATTCTTCTAAAAGCAAAGGA
GCTATGACATTTAATATCATTTGGTTTGGGTGCAGTGACCAAATTAGCTCCTCAGGTTTGGCGA
AAGAGCCATTTTTCCTGGAGTTATAACATCGGACACTTCTCTTATAAAGAACAGATCATTTCCA
AGAGCATTACTGGATAAATACAATCGACATAGACCATGGGTAAAGTAGCATAACTGCTGTATGA
ATGGAACAACTACGCTGTGGACTAGGGGCAACTGAGCAAAACTCTGTCAGGGATTTTGCTGACC
ATAAAAGATAATCAAGCACAAAAACAATATTAGGTGCATCTCCCAAGACGATGATTTCCAATAA
ACTTCACGGTAAAATGTCAATCAGGAATTAACATACCTTTGGGTTTAATGAGACCCAGTAGATG
TCACCATCAAAATCACTATTGGCCATCTCATCAGCCAAAGACCGTTGTCCAGTAGTAGGGAAGA
GTATCGCATGTTTAGAATTTCCCACAACCTTCCCTATGTCGCTACTATATGTTGCCTTCAAGAC
ATGTATATCACCAGGATGTAAGCCAGGATATTTATACACAAGAACATCTCCAGAAACTTGGCCA
TAATCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021