Detail information of Os03g0260266_circ_g.1


General Information
CircRNA Name Os03g0260266_circ_g.1
ID in PlantcircBase osa_circ_018963
Alias NA
Organism Oryza sativa
Position chr3: 8439259-8440205  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os03g0260100
Parent gene annotation Metallophosphoesterase domain domain containing protein. (Os03t0
260100-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0260266-00:1
Os03t0260266-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTGGATTATGCGCATGACGAATAATAAGTCATGATAAACGACTATGAACAAAATTAATTGTG
CCTAACAAGGAGATCAGACAAGAAGATAAGGAGTACcttttaggataaaattcaggcccagcat
tgtaagcagaattagcagagatgcgtggcatataaatggtacaagaattttgacaatgtattat
gcacagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTAGGATAAAATTCAGGCCCAGCATTGTAAGCAGAATTAGCAGAGATGCGTGGCATATAAA
TGGTACAAGAATTTTGACAATGTATTATGCACAGATAATCCAACATAGACAATGTGTTATGCAC
AGATAGCCCAACATAAAAAAAAAAATCTCCTCTAGTACTGTTATGACACCATTAGAAATCTATA
TAAGTGCTAGAGACAAAGTGGGTTACGGAAATTATAAGGCACAGATAAGACATAATTTGATTCG
TAATAGCTGCCAAAGATAAATAGAGTTATAGTTTAGTAAATTTAACTACCATTGTAGGTTGACA
CAGGCCAGTTATGGTTTAAGTGCTGAATGTATAGCCACCTTCATCTGTCCTGCTATTGAGTGTA
CATTAAGCGAGTCTGAAGGTGCATTGACATCAGTATAGCACACTACATCATTATTGTTACATAT
AAATGCAATTATTAGTAAATTATAATTGATGGTCAAGTCTAGTTAGCAAGAGCTGTTCTCCATT
GAGTAAGATGGTTTAGTGCTATGTTCAAGCTTATCGTACATTTCTGCTTCAAGTATCATCAGTA
TGATATTGAAGCATGATGTATTTGTAGTACTACATGCCCAGTATCACACGAGAGTAATATTTAT
TATGGACCAATAGATATTGTTCTACCAGCTAACCAAAGAGGACGTTCAATAATCAAGGCAGAGG
AGCATTAATTCTGTGCACAGTAATCAGCGGTATAAAGTGCAGGTCAATGTTCAACTGAAGCTCT
GACAGCAAATATGTTATAGTATGCTTTACATCTTCAAAGAAGCAGAATATAGAACTGGATTAAT
TGAAAGATAACTGTACACTGGATTATGCGCATGACGAATAATAAGTCATGATAAACGACTATGA
ACAAAATTAATTGTGCCTAACAAGGAGATCAGACAAGAAGATAAGGAGTAC
Conservation Information
Conserved circRNAs osi_circ_004699*
PMCS 0.10445257
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017