Detail information of Os12g0420300_circ_g.1


General Information
CircRNA Name Os12g0420300_circ_g.1
ID in PlantcircBase osa_circ_011312
Alias Os_ciR3688
Organism Oryza sativa
Position chr12: 13111446-13111613  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os12g0420300
Parent gene annotation Similar to tyrosine specific protein phosphatase family protein.
(Os12t0420300-01)
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCATGCTGTTCCTTTATTTATTTTCTTCCTAATTCATGTTTGTGTGATATTTGTGGCAAT
TTGGGATTGAGGGGAACAAGgtgatcacgctgttcctttatttattttcttcctaattcatgtt
tgtgtgatatatgtggcaatttgggattcaggggaacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATCACGCTGTTCCTTTATTTATTTTCTTCCTAATTCATGTTTGTGTGATATATGTGGCAAT
TTGGGATTCAGGGGAACAAGGTGATCATGCTGTTCCTTTATTTATTTTCTTCCTAATTCATGTT
TGTGTGATATTTGTGGCAATTTGGGATTGAGGGGAACAAG
Conservation Information
Conserved circRNAs osi_circ_009670
PMCS 0.415455704
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015