Detail information of AT3G10380_circ_g.21


General Information
CircRNA Name AT3G10380_circ_g.21
ID in PlantcircBase ath_circ_020848
Alias Ath_circ_FC1896
Organism Arabidpsis thaliana
Position chr3: 3226337-3228013  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G10380
Parent gene annotation SEC8
Parent gene strand -
Alternative splicing AT3G10380_circ_g.19 AT3G10380_circ_g.20 AT3G10380_circ_g.22 AT3G10380_circ_g.23 AT3G10380_circ_g.24 AT3G10380_circ_g.25
Support reads 15
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G10380.1:5
AT3G10380.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACGGTCTTTTGATGTCAAAATATGAACAACATGTGGTAAAGAGTCAAATCGTGCAGCAGCCCA
GCTCTCATCTATTCTTGCCAGCTCCTCCCTAAGGTActttcatcattagaagcggttctatatg
aaccatttgtgagccctctaacaccaaactgactatcacctttcagtgtccgtgttctacgtga
cagtggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCATCATTAGAAGCGGTTCTATATGAACCATTTGTGAGCCCTCTAACACCAAACTGACTAT
CACCTTTCAGTGTCCGTGTTCTACGTGACAGTGGTTGTGAGCTCATTCGACTAGCTGCAACAGC
TGTTGTCGTTGGTACTTCATCATCTCTTTCATATATGCTTGACGCAACTGAACTGCAGCATAAA
CATGGTCAAGAACAGAAGATTGTGCACTGAAAGAAGTGATGAGGCAAACAATCAAACAAGCAGG
CCACTAGATCCGAGGATAAAAAGCAGCACAGCTTCTGAAATTTGCTTATAGAATTGCAAAAGAA
ACCTACCTGTATTCACCTCTATTGTATAGGTGTGCATGCAAATCATCTAGAATTTTGAAGAAAA
GGGCTCCCCGCAACTTAGTTAGCTCAGATCTGACATCTTGAAGAGCACCAACCTAGGTTAACGT
ACCAAAATATCTATGAGTTCAACATACAAGTGAACAGTAGATCCCTTGGACAGAGATATTTCTA
AAGTCCCAACAGAACTTCGATGATCCCAGATCCTCTTCAATGGATTTATTACAAAACAATCCTA
GAGATCAAATTGATAAATGAATGGGAAGACCCACAATATTCCCATGACAATGCATTTGTTAAAA
TTGGCAGTAAGTAAATTACCGTTTGAAGCCCCTCACGCTCCAGCATTAGAGACGACTGGAGATA
CACTTGAATAGCAGCGTAAAACTGCTTATCAGCAATGAGCTTCTCAATACGAGATGGAACCTGT
TCAAGGTTTCAAGAGGCAGGGTCACCATTTTCACATCAGAAAAGCAGTTTCTTTTAAGTAAGCC
AAAATGAAAAAAAAGTAAGTACATATATCGGGAGCATATCAACAAAAGTAACATCAGAGATACA
GAGATGATGAATGAAGTATGAAACTTGATAGCAGCGCAGATACATAGCAAGCACTGTAAACTCA
AAATAAACAAAGAAATGTTACAGCTAATCCAACCAACCTTGGCAATGCCCTCGATTTGATCCAA
AAGTGAGATGATGTGCCGCAATGTAACAGAACGGTACCACAACTGATGTAATTGTTTATTGCGT
GCACCCAAGCTCTGTTTCGCTTCTGCTAAATCGTGCTTCAAGTCGCCTATCTTTTCAGTGGACT
CACTGAATAATCGCAAGATCTGATGAGGAATACATTGAAAGCAGAGCAAAAGAAGAGAGATAAT
CAAAACCAAGGTGTTCCACAAATGAAATTTTAGTAGATAAATTACAACAGAGGGTACTATTCCA
AAAAGAAAATTCTACATGCAGAAACCATAGAAGCAGCCATAGTTAGTATCAATATTAGATTTGT
TGTATCTTTGGCAAATGAAGCGTGCAATATGGAAGTCAATAAGCGGTAACAGAGGATGCTACTT
TAGAATAACAGAACGAACTATCCAATAAAAAGGAAGAGCTAACAGATATTAGAAACCTGTGAAT
AGTTTTGAATGGCCTTGTTGAAACCACCATGATAAGCATGGACAACTTCATCAACAACCTCCTC
GACAACATCACTTTGTTCCTTTAATATATGAATGTCAGCTTCACGGTCTTTTGATGTCAAAATA
TGAACAACATGTGGTAAAGAGTCAAATCGTGCAGCAGCCCAGCTCTCATCTATTCTTGCCAGCT
CCTCCCTAAGGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.164867308
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a