Detail information of BGIOSGA017405_circ_ag.1


General Information
CircRNA Name BGIOSGA017405_circ_ag.1
ID in PlantcircBase osi_circ_015040
Alias Chr04:32965087_32971900(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 34498642-34503501  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACATGGACGAAGAAGGAAGCTTCGACGATGCCATCGCCGGCTGCGACTACGCCTTCCTCGTC
GCCGCTCCGATGAACTTCAATTCAGAGAATCCTGAGcgagcgagtgatcgtctctgtatctttg
cagcttcgacgggatgcctgagaaaccgagagtctgctgttcgtcggagaagctgatcagggaa
gggttcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGAGCGAGTGATCGTCTCTGTATCTTTGCAGCTTCGACGGGATGCCTGAGAAACCGAGAGTCTG
CTGTTCGTCGGAGAAGCTGATCAGGGAAGGGTTCGAGTTCAAGTACACGAATTTGGGCGACATA
CTTGATGACCTTGTGGAGTACGGCAGGGCCCTGGGAATTCTACCACATTGAACGAACAGCTCAT
GCTGCTCTACTTTCAACCTACTCCCTTCATCCCAAAAAAACGAAATTAAGACTGGATATGACAT
ATTCTAGTATAACGAATCTAGACAGAGATATATCCAAATTCGTAATACTAAGATATGTCACATT
CAGTACTAGATTGGTTTTTATGGGATAGAGGGAGTAGCTGTCACGAGGACCAAACTATATATGC
GCTTGTGAAATAAGTGGTCTGTGCTTTTAAACATCTCAAAGAAAAAAAAATAGAGTGTTTTAAG
ATGAGCCTAATACACAGTAGATAATGGCAAAAAAATTAATACCTTATGGGGTATCTTTGTTCTT
GCATGTCATTTAAATACTTATATATATTTTTTAAAAAATTAACAAGATTCATTTGGATGATATG
TAAGAAATAAGGAGATGTCCATTTTGAGGGACCAAGGCTCCGTTCATTTGGTCTGTTAGGGATG
CCACTTGTTTTTTAGCCGCTTCCTAAACTGTTAAATGGTGTATATTATGAAAAGTTTTAAAGCT
TCTTTAAAAAAAATCTAATAAAACCATTTGTCATATTTATAGTAATTAATACTCCCTCCGTTTC
ATATTATAAATCATCTAGTCAAACCTTTTAACTAAAGGGTTTGACTAAGTTTATAAAAAAATAA
CAACATGTAAAAAAAATTGATTTCATTAAATACTACATTAAAGATATTTTAATAATGTGTTTGT
TTTGTTTTAAAATATTGCTATATTTTTTATAAACTTGATTAAATTTAAAAAGGTAGAATAGAAA
AAAAATTCAAAACAACAATACTATGAAAATGGAGAAAGTATTCAATTAACCTGACACTAATAAT
TTAGTCTCATTTAGCATTAGTGAAAAATCCTAAATTTCTAGCACCACATCCAAACTCAGCCCAA
AAGAGCTTACTGGTGGATAGTGGCCATCCACTTTGCCCAAAAGGAAACGTGCTATGCAGCCTCG
GGGGTTCCTTATTCAGTGTATATGCGCTAGCAAAGTACGTAGTGCAACACTTTATCCAATTTCC
TTTCTTGTTAAAAACTTTTAACTCAGATTTAAAAGCTTTCATGTGAAGATTTGAAAATTTTCGA
ATTAATATTTAAAACTTTCAACTCAGATTTAAAAATTTTCAAATAAGGATTTTTAACTTTTAAC
TCAAGATTTAAAACTTTCAAATCAAATTCGATAACTTTTAACCATGATTTGAAAAAAAATCTAT
ATTTGAAAATTTCAACTCAGAATTGAAACTTTCATCTCAAAATTTAAAACTTTCAACTCAAATT
CAAAACTTTCAAATGAAATTGAAGATGAAAGATTCAATTTCTAAAATAAAAAATTCGCAAAAAA
ATAGCCAAAAAAAAAACACATGAGGGCGATGCGTAAGCTTTCCTTCCCGTTCACTCCCAGGCTC
CCGGCGCGTGGTCGCGCATTCCTGATCCCCCCCCCCCCGGGAGAAAATTGCATAGGTACCACTC
ATAAAAACTGGCTTCACTATAATGCCATCCTCAAGATAGGATTTGCCCAAACGCCACTCTTAAC
ACGTGGGTATTCGCTGGAATGCCACTTTTCGGCTTTTTTCCATTTCGAAAATACTTTTCATCAA
TTTCAATTTTTCTTGGACTATTATGCCCCTGAGTCAACTGATTCAGTCAGACTCTTTCTTCTCT
TCGTTTCAATCTAGTGACCGAGCGCGAGAAGTCGAGAAGAGAAGCGGCAGTGACACCGGCGCCG
CCCACCACCACTGCATCGCCGCCGCGGCGCGCCTCACCAGTCCCGCCCCCCAACAGCTGCGCCG
CCGCTTCTCCCCGGCGAGTCTCCTCCCCAGCCGCCGCTATCCTCAGCGAAACCCTAGATACCGA
GCCGGCCGTATCGACGCGTACGGCCATGCCGTGTCCGCCGGCGAGGTGCTGGCGGCGCACCCCA
ACCACGTGCTGAGCCGGCAGTGCTCGTCGCAGCAGGGGGCGGTGGGCCGGATACACATCGTGTC
GTCGGAGTCGAAGCTGGAGCGCGGTGAGATCTACTTCCTCATCCCGGCCGCCTCCGTCCCCGAC
GCCAAGAGGAGGACGAGCACCGGCAGCGCCGCCGGCCGCGGGCACCACGTCCGCAGCAAGTCGG
AGGGCAGCGCCGCCGTCGCCGATTGGTTGGGCAGCCAGGGCAGCGCGTCGCCGGAGATGACAAG
GATGATGAGGGCGCAGAAGCAACACCACCACCAACACCGGCGACGCATGAGCACCGGGAGCCAT
GCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACTGAGGACCCCTGAGCTTAGCTTTCGTTTT
TTTTATTCTCTTCTCTGAATTCATAGTGGTTTTTTTTGCCTCCTGTGTAATTTCCTCTGGTGCC
CGGTAAATATTTTTGTTCACATTTTGTGTCAGTGATGTGCCGATTTTACATTCTGAAATCAACA
ACTGTGTATAATTTTCAAGCACAAAGCGACTTCTATTCTAGTAGTATCTTCTTGTATCTTTGAA
AAACATTTTGCAACTTCTTTTTAAAGTTTGTTTGGGTTAACCAAAGCGAACGAACTTGCTCATA
CAAAATTAAACAAGTCGGCAGCTCTGCTTGATGCAAAATTAAATGAAAATTAAACCGCTTGCAA
GTTATATATATGAACTCATGAATTGAGGTTGTATGTCATGGACTCATGGTGTATGTCACCGAGG
AGGCGGCACAACTGCGCGGACTAGGACGAGCGGCACAGCTGGGGAGGACCTCGGCGCGGCGGCT
AGAGCTGAGGTAGCGGTGGCGCAGTGGTGGTGGGCGGCGCCGGTGTCGCAGCCGATTCTCTTCT
CACCTTCTCACGCTCGCTAGATTGAACCGAGGAGAAGAAAGAGTCTCAGGGGCATAATAGTCTG
AGAAAAATTGAAATTGATGAAAAATATTTTTGAAATGGAAGAAAGCCTGAAGTGGCATTTCAGT
GAATACCCACATATTATGAGTGGCGTTTAGGCGAATCCCATCTTGAGAATGGCATTATAGCGAA
GCCAGTTTTTAATGAGTAGTACATATGTAATTTTCTCCTCCCTCGCGGGCTCGCGGCCCACCTC
GGCCTGCTAGCTTTCTAGCGCGCGCGATGGGCTTCCCCTGCCTGCTCGGCATCAGCCCCAATGA
ACACGGTGCACAGGGATAGTCACACGACACGGCGCGATTGCAGTAGCACTGTACCTACCGTCCG
TCCCATCTCTCGATCGGCTTATGGACAACGTGTATGACGCACGGCCGTATTAACGTCAGTTGGA
TGCCGATGGACGGCCATGAATCCATCGGTCCAGACGCACGCATGCTCCTTTGACTCTACCAGCT
ACGCATACCATTGCTGAGAGCGTGATATGACGATCTTGTTGTCCACTCCATATTGACACTTTAA
CCCAGCTGACGTGCGTAATCGACGCTCCGACTCAGGACCTGTTTAGATTCATGGGTTACTTTTC
AGTCCTCTTTCAAATAGCTGCAAATAATCTAAAAGTTATAAATAGGTGAGTTATTTCAGGGCTA
TTTGAAAATAACACATCCAAAAAAACTATCCCCCTTAAGAATACTAATTAGGGCTATTTCAGAT
GGGGCCCACTAAAAAGTGTCTTTTCTCTTTATCTCTCTCCATGAGAAAGTGCATTAAAGATTAA
ATAGCTCTTAAAATAACCCTTGGATCTAAACAACTTGAGACTATTTTATTGGATGGCTATTTTT
TTCTTAAAAATTAGTAGTTTTTAAAATAACTCTTAGCTAATTCTCTATACATGTCTCAATCAAC
CACCCAACTCGCACCGCACCGGTTTTATTTTACAATAAGGTGATATTCTGGATATAGTGCATGA
TGTCAGCATGTTTCTTTTCGGTAGTACTTAAAAAAAATCTTACTGATAAGCACGCCAGACCACC
TCACTAGACAAATTGAACTCTTCCCAAAGTACAGCAACAAACATAAATTCCTCGTCCTCTTCGT
CTCATCTGGGCTGGTGGGTTGTTGTAGCGACCGATCGACGACGACGATGTCGGCGGTCGAGAGG
AAGACGGCGTGCGTCACCGGCGGCAACGGGTACATCGCTTCTGCGCTCATCAAGATGCTGTTGG
AGAAGGGATATGCTGTCAACACGACGGTCAGAAACCCCGGTAAGATTCTCCTCCTTTTTTCACT
CTCTAGTTCGTGTTTTTTACTTTTTTTGCAGTGTTTCTTCCATTCATATGATCATATCCTCGGC
CTGCTAGTACCATATGAGCTAATTAGCGAGTGTTTTCGCTTAACCACTCATTAGCAAATGGCAG
GCTTAGCCGCACATGTGGACAATATCATATCTTTCGAAAGGGAGAAGTTGTCAAATCTTATCCT
TTTCCAACTTCCAACCGATAGTTACATATATATATCGTGACATATGATGGATCAAAATATGATG
CGACTTTATCAATACGATGGTGTGAATTTTCAGAGTTTCAGTTTCATCTCTGAAGATTCCACTA
ATTGCTGCGGTTTGTATTCAGATGACATGGCGAAGAACTCCCACCTCAAGGACTTGCAGGCACT
TGGCCCCTTGAAGGTCTTCCGCGCCGACATGGACGAAGAAGGAAGCTTCGACGATGCCATCGCC
GGCTGCGACTACGCCTTCCTCGTCGCCGCTCCGATGAACTTCAATTCAGAGAATCCTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR816
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021