Plant Circular RNA Database

Detail information of Os05g0515400_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0515400_circ_g.1
					
						ID in PlantcircBase
						osa_circ_028512
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 25557160-25559160  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							Os05g0515400						
					
						Parent gene annotation
						
							Similar to Auxin response factor 14. (Os05t0515400-01);Similar t
o Auxin response factor 14. (Os05t0515400-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0515400_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0515400-02:2
Os05t0515400-01:6

General Information
CircRNA Name	Os05g0515400_circ_g.1
ID in PlantcircBase	osa_circ_028512
Alias	NA
Organism	Oryza sativa
Position	chr5: 25557160-25559160 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	PcircRNA_finder
Parent gene	Os05g0515400
Parent gene annotation	Similar to Auxin response factor 14. (Os05t0515400-01);Similar t o Auxin response factor 14. (Os05t0515400-02)
Parent gene strand	+
Alternative splicing	Os05g0515400_circ_g.2
Support reads	1
Tissues	seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0515400-02:2 Os05t0515400-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAAGTTACATTTTTGCTGTGCAGGTCCGCTGGATTAATTTCAGGCATTAGTGAAGTTGACCCC
ATAAGATGGCCTGGATCAAGATGGAAATGCCTACTGatgttgcagcggaacttccgcgagggtg
gaggtgaagatggtgcaggggagatggagggttgtgatgcagaaaagaagccccggatgccaca
catgttct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATGTTGCAGCGGAACTTCCGCGAGGGTGGAGGTGAAGATGGTGCAGGGGAGATGGAGGGTTGTG
ATGCAGAAAAGAAGCCCCGGATGCCACACATGTTCTGCAAAACTCTCACAGCATCTGATACAAG
CACCCATGGAGGTTTCTCTGTTCCTCGCCGGGCTGCAGAGGACTGTTTCCCACCTTTGGTGATA
CACTTAAAAGAAAAACTTGTAACTTTTAATGTAACTGCTAAAATTCTGATATAGTCACTTGCAT
TGCTGCTCTAACCAGCTGTAGTTCTTCAATTCTTTGTAGGACTATAAGACAGTTAGACCTTCTC
AAGAGCTGATTGCCGTGGACTTACATGGCACACAATGGAAGTTCAGGCATATTTATAGAGGTGC
ACGATTGGAACACATTTGTTTTAGATTTTGTGCTGTTGTCTTGTATACAATACACATGTCCGCT
GTGTTTACTTGGAGAATTTAAACCACAATAGAGAACTTGGTATGCTCACTGCTTGTGCTTGTTT
AAGGCCAAAAAGGAGGGTTCAAAAAAGATGTCTAGTGGTGGTAGATTTGGATAGGATGGACTAA
GAAGGGGCTGCATTTCTAAAGTAGAAAACTATTGTAGTTGTGTCTGGATCATGAAGGAAAGTTG
CCAATCCAATATACTAAAAGGAGAAATATTTTTTTCTATTACTTGGTAGTACGGAATTTGGAAC
ATGTGTGTCCTTCTATGTTTGCTAATTTGATAGTATGAAATGAGGAATCTTTCTGGACTTGGTT
GCTGAAGTGAGCTAAGAATTTGCAAAGGCGTTAAAGCACTTCGTAGTATTGAGGACTCATTGGA
TTGATTAGAGGCTCAAAGTTAACTAGCTAAGGTTAACATAATAAGTAAGGTGGATGTAATTTAT
TGTGCTGGAGGATCAGGTTTGTAATATGGCGTTTTTTACCTATTGCTGGCCACGAGTCTTGAAA
ATCTGTGTAAAGCAGTGTGAAATTTATAGATGATTTAAGCATCAGCACAACTAATTTCCTTCTT
CAGATGTGCTACCACTTTTCTGGTTTTCACTATAAATCTATGCATTGCAGCATTTTTCTTCTCA
TTTACGTGAACTCTCAGTTTAATTGTGACGTGGAAAAAAAAACTTCTTGAATTTCAGGCCAGCC
TCGTAGGCATCTTCTAACGATTGGATGGAGCTCATTTGTCAATAGGAAAAAACTAGTCTCAGGG
GATGCTGTCTTGTTTCTTAGGTAAGCATATCATCTATCTAAGTGATGAAGTTAACTTCCTTTTG
TCATTTGTCCTTTTTCATAAGCTTCAATTGTTATTTTTATACAGAGGTGATGATGGCCAACTAA
GATTGGGTGTAAGGAGAGCAGTTCAACTTAGAAATGAGGCCCTCTTTGAACCTGTCAACAGCAG
CGATTCAAAGCTACGCATTCTATCTTCTGTTGCCAGTTCCTTGGAAAATAAAAGTGTTTTCCAC
ATTTGTTTCAACCCAAGGTTTGTGCAGACAAGTGCAAAATTTCAAGTTCCAGTTAATCACTGTT
ATGCTTGCATGGATAGTTAAAAGTCATAAAACTCCCTTCACAATTATGTAATCCTTTAGGGTTG
TTCTTTTTCTTCCTTTACCTGATCATATATGGTAGTATGGTACATGAAACTTATACAAGAAAAT
GCCTTTTTAATGTAACTCTGGCATAGCTTGAGTGACTTGAAAGTAATTTCGGGTTTTCTATTCT
CCCACAGGAGTGGTGCGTCAGAATTCATTGTACCGTATTGGAGATTATTGAAGAGCCTGAACCA
TCCATTTTCCATTGGAATGAGGTTCAGAGTTTGCTATGAGAGTGAAGATGCTAATGAGAGGTCT
GCACTTTTAAGTCAACCAAATGGTATTAGTCTATCTCAAATCTCATGAAGTTACATTTTTGCTG
TGCAGGTCCGCTGGATTAATTTCAGGCATTAGTGAAGTTGACCCCATAAGATGGCCTGGATCAA
GATGGAAATGCCTACTG
						
					

			
		

Sequences
Splice junction sequence	TGAAGTTACATTTTTGCTGTGCAGGTCCGCTGGATTAATTTCAGGCATTAGTGAAGTTGACCCC ATAAGATGGCCTGGATCAAGATGGAAATGCCTACTGatgttgcagcggaacttccgcgagggtg gaggtgaagatggtgcaggggagatggagggttgtgatgcagaaaagaagccccggatgccaca catgttct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGTTGCAGCGGAACTTCCGCGAGGGTGGAGGTGAAGATGGTGCAGGGGAGATGGAGGGTTGTG ATGCAGAAAAGAAGCCCCGGATGCCACACATGTTCTGCAAAACTCTCACAGCATCTGATACAAG CACCCATGGAGGTTTCTCTGTTCCTCGCCGGGCTGCAGAGGACTGTTTCCCACCTTTGGTGATA CACTTAAAAGAAAAACTTGTAACTTTTAATGTAACTGCTAAAATTCTGATATAGTCACTTGCAT TGCTGCTCTAACCAGCTGTAGTTCTTCAATTCTTTGTAGGACTATAAGACAGTTAGACCTTCTC AAGAGCTGATTGCCGTGGACTTACATGGCACACAATGGAAGTTCAGGCATATTTATAGAGGTGC ACGATTGGAACACATTTGTTTTAGATTTTGTGCTGTTGTCTTGTATACAATACACATGTCCGCT GTGTTTACTTGGAGAATTTAAACCACAATAGAGAACTTGGTATGCTCACTGCTTGTGCTTGTTT AAGGCCAAAAAGGAGGGTTCAAAAAAGATGTCTAGTGGTGGTAGATTTGGATAGGATGGACTAA GAAGGGGCTGCATTTCTAAAGTAGAAAACTATTGTAGTTGTGTCTGGATCATGAAGGAAAGTTG CCAATCCAATATACTAAAAGGAGAAATATTTTTTTCTATTACTTGGTAGTACGGAATTTGGAAC ATGTGTGTCCTTCTATGTTTGCTAATTTGATAGTATGAAATGAGGAATCTTTCTGGACTTGGTT GCTGAAGTGAGCTAAGAATTTGCAAAGGCGTTAAAGCACTTCGTAGTATTGAGGACTCATTGGA TTGATTAGAGGCTCAAAGTTAACTAGCTAAGGTTAACATAATAAGTAAGGTGGATGTAATTTAT TGTGCTGGAGGATCAGGTTTGTAATATGGCGTTTTTTACCTATTGCTGGCCACGAGTCTTGAAA ATCTGTGTAAAGCAGTGTGAAATTTATAGATGATTTAAGCATCAGCACAACTAATTTCCTTCTT CAGATGTGCTACCACTTTTCTGGTTTTCACTATAAATCTATGCATTGCAGCATTTTTCTTCTCA TTTACGTGAACTCTCAGTTTAATTGTGACGTGGAAAAAAAAACTTCTTGAATTTCAGGCCAGCC TCGTAGGCATCTTCTAACGATTGGATGGAGCTCATTTGTCAATAGGAAAAAACTAGTCTCAGGG GATGCTGTCTTGTTTCTTAGGTAAGCATATCATCTATCTAAGTGATGAAGTTAACTTCCTTTTG TCATTTGTCCTTTTTCATAAGCTTCAATTGTTATTTTTATACAGAGGTGATGATGGCCAACTAA GATTGGGTGTAAGGAGAGCAGTTCAACTTAGAAATGAGGCCCTCTTTGAACCTGTCAACAGCAG CGATTCAAAGCTACGCATTCTATCTTCTGTTGCCAGTTCCTTGGAAAATAAAAGTGTTTTCCAC ATTTGTTTCAACCCAAGGTTTGTGCAGACAAGTGCAAAATTTCAAGTTCCAGTTAATCACTGTT ATGCTTGCATGGATAGTTAAAAGTCATAAAACTCCCTTCACAATTATGTAATCCTTTAGGGTTG TTCTTTTTCTTCCTTTACCTGATCATATATGGTAGTATGGTACATGAAACTTATACAAGAAAAT GCCTTTTTAATGTAACTCTGGCATAGCTTGAGTGACTTGAAAGTAATTTCGGGTTTTCTATTCT CCCACAGGAGTGGTGCGTCAGAATTCATTGTACCGTATTGGAGATTATTGAAGAGCCTGAACCA TCCATTTTCCATTGGAATGAGGTTCAGAGTTTGCTATGAGAGTGAAGATGCTAATGAGAGGTCT GCACTTTTAAGTCAACCAAATGGTATTAGTCTATCTCAAATCTCATGAAGTTACATTTTTGCTG TGCAGGTCCGCTGGATTAATTTCAGGCATTAGTGAAGTTGACCCCATAAGATGGCCTGGATCAA GATGGAAATGCCTACTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.123173876

Conservation Information
Conserved circRNAs	NA
PMCS	0.123173876

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							25557161-25559157(+)
25559131-25557191(+)
25557296-25559157(-)
25557256-25558987(-)
						
					

						Potential amino acid sequence
						
							MLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDY
KTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLR
LGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKS
LNHPFSIGMRFRVCYESEDANERSAGLISGISEVDPIRWPGSRWKCLLMLQRNFREGGGEDGAG
EMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHG
TQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFE
PVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYE
SEDANERSAGLISGISEVDPIRWPGSRWKCLLMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHM
FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRH
LLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVA
SSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERSAGLISGIS
EVDPIRWPGSRWKCLLMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGF
SVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLV
SGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPR
SGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERSAGLISGISEVDPIRWPGSRWKCLL
(+)
MAWIKMEMPTDVAAELPRGWR*(+)
MGACIRCCESFAEHVWHPGLLFCITTLHLPCTIFTSTLAEVPLQHQ*(-)
MCGIRGFFSASQPSISPAPSSPPPSRKFRCNISRHFHLDPGHLMGSTSLMPEINPADLSLASSL
S*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	25557161-25559157(+) 25559131-25557191(+) 25557296-25559157(-) 25557256-25558987(-)
Potential amino acid sequence	MLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDY KTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLR LGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKS LNHPFSIGMRFRVCYESEDANERSAGLISGISEVDPIRWPGSRWKCLLMLQRNFREGGGEDGAG EMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHG TQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFE PVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYE SEDANERSAGLISGISEVDPIRWPGSRWKCLLMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHM FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRH LLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVA SSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERSAGLISGIS EVDPIRWPGSRWKCLLMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGF SVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLV SGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPR SGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERSAGLISGISEVDPIRWPGSRWKCLL (+) MAWIKMEMPTDVAAELPRGWR(+) MGACIRCCESFAEHVWHPGLLFCITTLHLPCTIFTSTLAEVPLQHQ(-) MCGIRGFFSASQPSISPAPSSPPPSRKFRCNISRHFHLDPGHLMGSTSLMPEINPADLSLASSL S*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0515400_circ_g.1

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