Detail information of BGIOSGA030299_circ_g.2


General Information
CircRNA Name BGIOSGA030299_circ_g.2
ID in PlantcircBase osi_circ_007945
Alias 9:1321609|1325401
Organism Oryza sativa ssp. indica
Position chr9: 1321609-1325401  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA030299
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA030299_circ_g.1 BGIOSGA030299_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA030299-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTGCATAATGTGCCATTTAGGTTAAAAGAGGAAGAAAGAGGGTTGCATGAAACACAAATG
GGCATTGTAAAATCCATCCAAAACATGGAAACAGAGattgatgttgaaaatccttgtgtcatta
tgagtcaggacaaaagtagagaattcttacattcagggaataacaaggacaagtttaaggtaat
tagtttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGATGTTGAAAATCCTTGTGTCATTATGAGTCAGGACAAAAGTAGAGAATTCTTACATTCAG
GGAATAACAAGGACAAGTTTAAGGTAATTAGTTTCATTAGTATAATGGCAATATCATTACAAGC
ATGATTCTTCATTTTTTTTATTTATGCATTACAACATTCGGAAACATCTACTGTACTGTATATT
CCTTGACTAAGGAACTTCATGCTTCAATCCTCATATACGTATTTATTCAATGGCATTGTGAAGA
ATGCTTCCTGTTCATTTGTCTACTGCTCTCGAATGCATTCATGTGTCTTTTTGTTCTTTCCATC
TACCAGTAGTACTGTTTTTTGGTAGATCATGCTCCTTTCAGCGGTATATGATGTTTTAGAAAAC
ATTTAGTCCGACTTTGTTTTTAGATTTGATTACTACTATTTGGGTTTGTCATTTGAAAATGGTA
TATTAGATTTGTCATGACTAATAATTCCGTAATGTATTAGTTTTTCATTACATATCAATAGAAA
AAAATAACACCATAGTGAATTATCTAACCAGGGCAGATATCTGATGGTAGCTTACTATTTGAGA
TGACAGTAAAATGAAGTCAATGCAATGGTGCTGTTGTCATAATTCTGCCTCATACCTGTTCTTA
TTATATCTTTTCGTGTGATAATTGTGAGCATTGTTCTAGCCCTTGTGTTCATACTATCAGATTT
GATGTTATTCATGAGTATGCATTTAATTTAATTATTAATTAGGTATTTATAAACCAGATAGGCA
CATGGGCTAGACTATGTAATATATGTATACTAGACTTAGCTCACTATGTTTTCTTCTAGTTCTT
TTTCAAGGCTACTCTTCTTCAACATGTAAATGATTTGCTTCTGGCGATAAGAGAACTGTTGGAC
AATGCGGACTCTGTTGTGCAAGAATTGGAAAAGTCAATTAAGCCAGCAATGATGGAGCTTGATG
AATTACAACAGAAGATAAAGAATATGGAACATATAGAGGAGATAGCACATGAAATTGATAACTT
AAAGAAAAAGTTGGCCTGGTCCTGGGTTTATGATGTTGACAGACAAATTGAAGAACAAACAGTA
AAACTTCTGAAACTGAAAGAGCGAATTCCCGCCTGCCAAGAAAAAATTGATGGACATGCAGTAA
GTTGAGATCTTACTGGGCACGAGCATTTTATTTTTTGAGTAACGCAATGTACATTTAATATGAT
TGTTCTATAATGTTACCCCGCTAAGGAACCATTGCAAAGTTGGCACTTTAAATTATGCCATTGC
GAAGTTTGAGGCTGGAAATATCCATTGCAAAGAGCATATGTTCATAGGTATGCCATGCAAAGGA
TGCGCTCGGCTCTCATGGCGAAGGAGGTGGAGGAGCTTGGCTGTGATGGGGACACATCGATCCT
GAGTCCTGACCAGCGGCTTCCTCTCTTCTTCCCTCCCATGAATTTTCAAAGGATGAGCACAATG
CGGTGGCTGTGACATTTGATTGTTTGCTGCTAGCCAAGGAACCCGGTGGTTGTAATTTTTTTAG
GCTTGCTGATAAATGGGGAATCAGCTACTGTTTTGTTATGTTTGCCCATATATCTTCTTATCGA
TTGCATGGTTATATATACAAACAATAAGCGTTACTATATTGGAATATTGATTGCTGATAAAGGT
TTGTTGATAAAGGTGATCTTGCTTAATTTGATTTTATTTGATTTTGTTCTACTATATGCAAACT
GCATGGTTATATTCTAAAAAATATCTTGCTTAATTAATTATTCCGATGTATATAAAGTCTATTG
TTCAAGGATTCATACGCCTAACTTATTACATATTCTTATGTAGGCCATGATAGTCAAATTGAAG
GAAGAATTAACAGATAAGGAAAGAAATGCCAGATCTTTGGTAGAAAAGTCACGTGAAGTAACCA
TGATGAAAGAAAAACTGGAGGATGACATTGCTCAGGTATGTGACTATTATTTTCAGTTCAGGAA
CATGAGTTCTCTTCAGAAGGTGTTCTCTACATGCTGTTTTTCATTGTGCAAGGAAATAAAACTG
AAATGGTTATGACCATGTGATGTATAAGAATTGACCAATCAAAGGTCTCCAAACATGAATGACC
CCATCTGTTGTCCCATTTTTTTTTTGTCTTCTGTGTTCTTTAGGTTTATAAATTGCTGTCATCT
GCAACTTTCTCTGCTTGTTATTCTTATTGAATCTGTAACCATAAATTATTTTTTGCTTGATATT
TGTTTAGGCTAATAGTGATTTCCCAGAAATATTATTATTCAATAAGTGCTTGGGTTCCTACTGA
GTGCTGAAATTAGCTTAATTTTGCTTAGTATTATTCTTTTCGTAATCCTTCTTTGTTGTCTTGT
GCGCATAATCTTGTCGATAGGGGAGAGAATTGTGCTATCTTCTTGGAATCGGTTTACCTAGGGC
CCTAATGCCCTCCTGGCTGCAAACTGGCATCAAGTGCCTAAATTGCTGCTGAGCTGTGGCTTGG
TGGCTGCCATTGTGGGAAAAAAATCTGCTTGGCATCCTCAGTGGAGGGTTAATGCCAGGTGCCA
AGGTGGCATCCGCCAAGGCCCTTTTGTTTATGTGCTAGATCATTTGACCTAGAGCATTTTTACT
AATCTAATACACACACTGTTCTTACTAAGACAGTTCCTTTCCTATTATTTGGGATGGAACTCGA
CTGGGAAATGAAATTATTAATTATCCTTCATGCTACTAACTATTTATGTTGCTTGTTTTTTTTG
CAGGCTGTTGCACTGAAGATTGAACTAGAGAGAGAGCATGTACGTGGTACAAATGTGCTAAAGA
ATATGAACAATCGTGTGAAACAACTCCAGAAACAAATTCATGATTTCCGGGAGCAGTATATTCA
ATACACGCAGGTTACATTTTTGGCGTTTCTTTATATGCTTCAATTTCCATGCTGGTGGGGAAGT
CGTTTAACCTCCTTACCAACTTATTTTACATATTCTAGGACTGGCTCTGCTGTCATTCTCATTT
TTTAATTGAATGTAGTATTCATGGTTAATTTCTGAAATATGTTCGAAGACAATTTGTTAAATAA
ATTTTCCAGCAGACAATAGGAATCAATAAAAGTAGTTCATCTGTGTACAAATTCCAATTAAAAG
GTCAATGCAAAGCACAATCTTTTCTGTATTGCATCATATCCTGGCACGCAGGTTATGTATCTTA
TTGACAATTGTGACTAGTCACTAGTCGTAAGGTGACAAAGAGGGTATTTGTATGCAATTTTATT
TACCTCTTAAAAGAAAGCCTTTGATTTTTCATTTTTTTACGGTTATTATAAAAAAACGAAATAA
TCAGTAAAACTGCATACTACCTGTTCTTTAACATATGCTTCCAAGTGCCATGCCTCTTTATTAT
TTCTGTACTACCTCCTTCCAAAATATAACAACTTCTAGCTATGTATCTGGACAAGCGCATACTT
AGCCAGAAATTGCCAATTTGCCATATTTTGGGACGGAGGGATTAGTATTTTGGCTGTACATTTT
CCAGTTTTCCTATCGTATCTGAACCATTTCTTTGTTAAACTAAAGGATGAATCATCTAAAGCTG
AGAACGACAAGTGTGAAATACAGAAGGAGATAAATTCTCTTCATTCAAATGTTACAAGGTAACT
CAGTTATCCTTATACTTTAGCAATCCTACCATTTCCTGGTTGTGTGATTTTGCATAATGTGCCA
TTTAGGTTAAAAGAGGAAGAAAGAGGGTTGCATGAAACACAAATGGGCATTGTAAAATCCATCC
AAAACATGGAAACAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 1321636-1325235(-)
1321637-1325398(+)
Potential amino acid sequence MTQGFSTSISVSMFWMDFTMPICVSCNPLSSSFNLVTFE*(-)
MSQDKSREFLHSGNNKDKFKFFFKATLLQHVNDLLLAIRELLDNADSVVQELEKSIKPAMMELD
ELQQKIKNMEHIEEIAHEIDNLKKKLAWSWVYDVDRQIEEQTVKLLKLKERIPACQEKIDGHAA
MIVKLKEELTDKERNARSLVEKSREVTMMKEKLEDDIAQAVALKIELEREHVRGTNVLKNMNNR
VKQLQKQIHDFREQYIQYTQDESSKAENDKCEIQKEINSLHSNVTRLKEEERGLHETQMGIVKS
IQNMETEIDVENPCVIMSQDKSREFLHSGNNKDKFKFFFKATLLQHVNDLLLAIRELLDNADSV
VQELEKSIKPAMMELDELQQKIKNMEHIEEIAHEIDNLKKKLAWSWVYDVDRQIEEQTVKLLKL
KERIPACQEKIDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMKEKLEDDIAQAVALKIELE
REHVRGTNVLKNMNNRVKQLQKQIHDFREQYIQYTQDESSKAENDKCEIQKEINSLHSNVTRLK
EEERGLHETQMGIVKSIQNMETEIDVENPCVIMSQDKSREFLHSGNNKDKFKFFFKATLLQHVN
DLLLAIRELLDNADSVVQELEKSIKPAMMELDELQQKIKNMEHIEEIAHEIDNLKKKLAWSWVY
DVDRQIEEQTVKLLKLKERIPACQEKIDGHAAMIVKLKEELTDKERNARSLVEKSREVTMMKEK
LEDDIAQAVALKIELEREHVRGTNVLKNMNNRVKQLQKQIHDFREQYIQYTQDESSKAENDKCE
IQKEINSLHSNVTRLKEEERGLHETQMGIVKSIQNMETEIDVENPCVIMSQDKSREFLHSGNNK
DKFKFFFKATLLQHVNDLLLAIRELLDNADSVVQELEKSIKPAMMELDELQQKIKNMEHIEEIA
HEIDNLKKKLAWSWVYDVDRQIEEQTVKLLKLKERIPACQEKIDGHAAMIVKLKEELTDKERNA
RSLVEKSREVTMMKEKLEDDIAQAVALKIELEREHVRGTNVLKNMNNRVKQLQKQIHDFREQYI
QYTQDESSKAENDKCEIQKEINSLHSNVTRLKEEERGLHETQMGIVKSIQNMETE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021