Detail information of AT2G20590_circ_g.3


General Information
CircRNA Name AT2G20590_circ_g.3
ID in PlantcircBase ath_circ_014053
Alias 2:8867792-8868403
Organism Arabidpsis thaliana
Position chr2: 8867792-8868403  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G20590
Parent gene annotation Reticulon-like protein B17
Parent gene strand -
Alternative splicing AT2G20590_circ_g.1 AT2G20590_circ_g.2 AT2G20590_circ_g.4 AT2G20590_circ_g.5
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G20590.1:4
AT2G20590.2:4
AT2G20590.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAGACCACAGAAGTAAATGTACCTTTGACAAAGAGTGTTTGACAAGAAGGACCCGCAAAGT
AACACAAGTCCGAGATTGGAAACCGCCGAGAAAACGctttttggctaatctgatgcgtgtaaca
tgaatacagctttgggatggtgaaactgaggaagaaacctgtttcagtaaccatacacacatat
catcatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTGGCTAATCTGATGCGTGTAACATGAATACAGCTTTGGGATGGTGAAACTGAGGAAGAA
ACCTGTTTCAGTAACCATACACACATATCATCATCACAATTCCTATCATGCTTAACAATGTTTC
AGCTTATGTTCCAAATGTTAATTACCAAATGCAGATAGCCTCCACAGTGTTATGAGATGACCAT
ACTCAGCTCCAAGTAGCAGAAATGGTGTCACCTGTGACAAAAAGAAAATCAGCAGATGAAAGGG
CAAGTAAACCACCAACACATAGCAATCACCAAAACTGATTTGATTTTGTTTACTTTGAGTGTCA
TTGATGGTTCTCCTGAAAAAAGCTCACTAGTCTTCGAGATAAAAAAGTTGGTTGCAGGAAGCAC
TCGTCTAGCTGAGCGCAAGACATCATCTTCACTCACATGGAACGCTCTCTTTGTGTCTTCATTT
TTCCTAAAAGTAACAACACATTGAAGGATCACACTAACTATTAGCTTATGGAGAATGCCAAACA
AAAGAGACCACAGAAGTAAATGTACCTTTGACAAAGAGTGTTTGACAAGAAGGACCCGCAAAGT
AACACAAGTCCGAGATTGGAAACCGCCGAGAAAACG
Conservation Information
Conserved circRNAs NA
PMCS 0.171460254
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020