Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03090_circ_g.2 |
ID in PlantcircBase | ath_circ_000385 |
Alias | Ath_circ_FC0154, AT1G03090_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 740124-741065 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT1G03090 |
Parent gene annotation |
Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial |
Parent gene strand | + |
Alternative splicing | AT1G03090_circ_g.1 AT1G03090_circ_g.3 AT1G03090_circ_g.4 |
Support reads | 34 |
Tissues | root, aerial, whole_plant, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G03090.1:4 AT1G03090.2:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.300224118 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
740232-741062(+) |
Potential amino acid sequence |
MGDKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKD FADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIE EAPAAIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHG HEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTILLE KYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAAIHPGYGFLSESSDFAQLCE DSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPT HGGGGKGMRIVQSGKDFADSFLGAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHL YERDCSVQRRHQKIIEEAPAAIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASK RIMGAAGVPLVPGYHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGA QREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPA(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |