Detail information of Os06g0354500_circ_g.1


General Information
CircRNA Name Os06g0354500_circ_g.1
ID in PlantcircBase osa_circ_042326
Alias NA
Organism Oryza sativa
Position chr6: 14505001-14505242  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0354500
Parent gene annotation Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC
1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3). (Os06t
0354500-01)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0354500-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAACAGGGCAAGGACCATT
CAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATTctccgtggtgaatcgtttcagtaaatct
cgctccctcaagcagagcaagtccatctattcaccatcacaaaggcatacataaagagttgtct
catgacag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 156
Transcript exons: 14505001-14505054,14505141-14505242
CTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTGGAAACTG
GAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAACAGGGCAAGGACCATTCAAGTGTT
CCAAGCCCAATCCCTTGAATGGTTGATT

Genomic sequence CTCCGTGGTGAATCGTTTCAGTAAATCTCGCTCCCTCAAGCAGAGCAAGTCCATCTATTCACCA
TCACAAAGGCATACATAAAGAGTTGTCTCATGACAGCTATCTTATAAATGTAAGAAACTAAGTT
ATTATTCTATACCTGGAAACTGGAGCTTCTTAGTGTGCCACTTGTCAGATAATCAGGAATAACA
GGGCAAGGACCATTCAAGTGTTCCAAGCCCAATCCCTTGAATGGTTGATT
Conservation Information
Conserved circRNAs NA
PMCS 0.130166116
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study