Detail information of AT2G24820_circ_g.2


General Information
CircRNA Name AT2G24820_circ_g.2
ID in PlantcircBase ath_circ_014696
Alias NA
Organism Arabidpsis thaliana
Position chr2: 10575982-10576059  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT2G24820
Parent gene annotation Protein TIC 55, chloroplastic
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G24820.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCGGGGTTTCGCAGGGACTTGGGGCCGAGAGAAAGAAGatgctcagcctttggttttcgaggt
cacagagcgaagta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 78
Transcript exons: 10575982-10576059
ATGCTCAGCCTTTGGTTTTCGAGGTCACAGAGCGAAGTAATCGGGGTTTCGCAGGGACTTGGGG
CCGAGAGAAAGAAG

Genomic sequence ATGCTCAGCCTTTGGTTTTCGAGGTCACAGAGCGAAGTAATCGGGGTTTCGCAGGGACTTGGGG
CCGAGAGAAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.234819101
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017