Detail information of BGIOSGA030391_circ_ig.1


General Information
CircRNA Name BGIOSGA030391_circ_ig.1
ID in PlantcircBase osi_circ_018832
Alias Chr09:5073642_5076341(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 4279277-4281976  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGGCAATGAGGCTCCAAAACCTCATTATCCTTTCTAGCTCCTTAAAACTTCTTTGAGGTGT
GCAATTGATTGACCCAAATTCTTATTCATTGCTCATcctgttcttcacttgctccttcgccgta
caatgttggacattccttcatatccgttggcacacaactcgagaattcatgaacatggtaacca
cagctaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTTCTTCACTTGCTCCTTCGCCGTACAATGTTGGACATTCCTTCATATCCGTTGGCACACA
ACTCGAGAATTCATGAACATGGTAACCACAGCTAAAAGAGACTTTGCTCACTCTTTCTTTATTG
AAGTCATTGCTATAGCTTTTTGAAACATTTGGAAGCGAAGAAACGATCTTATCTTCAGAAACGA
TCTAGCCATCTTTCAACCTCTGGAAATTCTGCTTCCGAGAAGATTTTATTCTACTTTTGAATAG
GATAAAAGTGCATGAACGTCCACTCTGGAAATCATGGCTTGACAATTTGTAACATTTCCAGCCC
CCTGTATATAAACTCTTGTACATAAACTCCTTTAATATATCACAGTAGGAGCCTCTCCTACTGT
TTTCCCGTCAAAAAAACATATTAATACTATTTTCTTATTAATAATGACAGACATTTTGGTCATA
GTCTTTGTCAATAAAAATGGATTTACATACCTTATTTGGTGCAACACCGAATTCAGAAATTTTT
GGAGCTCATTATTCTTGGCTTCATAAATCCATGGACTTTATCAACGATTACATTGATAATATTT
GGATGAATCGTTTTGTTTTCATTTCAGATGAAATATAAAATTTTAAACCACTATAATTTAACAT
ACAAACTAAAATCCAAGGTGGATTTGAAATCTAGAGTTGTGACAAACAAAACCTAAAATTTCTT
ACTAAACTCTTACTAATACGTGTCATGTTGAGAGTGTTGAGAGTTCTTCTAGATTTTTTATGAC
TCTTATCTAGTTAAATCAATGGTTAAGATCATTAATTATTTATAAAAGTTTTGTAATATTCTAT
TTTAAGTATGTGTAGCAGTGTTCTTTCTCAATGGAAGGCTAAAAGAAGCCTTTTCTTATAGGAT
GAGTAATCATAGAATAATTTTAAACAAAATTGGTAATATAGATTAGGAGCAATCGTGTTATTTT
CTCTACTTATTACTTCCTCCGTTTCATAATGTAAGACTTTCTAGCATTGCCTACATTCATTTAT
ATGTTAATGAATCTAGACATATGTATGTGTTTAAATTCATTAACATCTATATATATGTGGACAA
TGCTAGAAAGTCTTATATTGTGAAACAGAGGGAGTATAAGTTAATTGAATAGTCTGTTTCGCGC
TCCTCGATGACTTCTATGTGTGGTCTCTGGTCGCCTATCTGATCGACAATTTAAAAGCCAACGT
TTCATGCATCTTATTTAATTATTTTTAAAAAAATATTATTTGGAGCAATCAGTATTACATCCCG
ATTTGCTTGGCCCAGCCCATCCTAGCTAGCAGAGTAACAGTGCATGCAATGCGGGTGTACGTTT
GGTGATTGGTCTAACAGATGATTTTGGTTAAGTCTTTAAAGAATTCCAGTCATCTAAAACTAGC
TTATGCAGTCAAGCATTCGCGAGACCATAACCGTCCTCTATAGTGTTTAGCTTACATATTTCTT
TGATTGTATTAGAGAATAAAATTATTAAGAAATTTAAATTAGAATGCAAACATAATTATTTTTT
ATATGTAATAAACGGTATAATTTTAACAACTACGTGTTTAACGTAATTTATCGCAATTTTACAT
TCATAAGTCTTTTATTTGGTTCTACCCACTAAAAGTCAGAAGCTACCATATTCCCTTTTTTTTC
CTACTGGCTTACCAAAATGATGATCCTCATCTAGTCAACTGTCTGGCCTTCAGTTACTTTGCCT
CATAAGAATGTTTTAGGAAAGTAAACTCAAATAATTGACCATTATGGTTCCATAATTCATTGCA
ATTGATGAAATATGCGTGAACTATTTGAAAGAGTTAGTGTGTGAAATATTATAACCTAGTGATA
AGAAAAATATGATCAAGTTGTTTTATATTTCTCTAATCTTGCTTTTATTAGCAAGATGTGATTC
TTAATCTAATTTCAGCATTTTGAAAAGTTCATGAACAATATGATTAACAATAAGGCCCTTCTGG
GAAAAACTGACATGATTGAACATTTGGAAGCACCCTATTGGCTTTGAATTCTGAAAACTCCAAT
AAAATATTTTTGTGGTTAGAATTAGGTATGGGCGTCTGATTTTGGCATTGTAAATCTATCCACT
ATTTTTCGTAATATTATGAAATTACTATAATTCTTTAATAAAGTGCCAATGTATCATCATCACA
AAACTGTCTAAAAAGCAGTAGTAGTGGCTTATGATTAAAAATGGTTGTATATCAGTTCTCATAT
ATGCTTTCTATGCTTATATTTTCCATGGTCTATCTCACTCTCGAATCCTAAAATCCGTATGCTT
TCTAAGCAGGCTGCAATGCATGATTAACATCATATATACTAAATCACTACTTAGAGCAGGATAA
GTTTGATATTTAGTATTTATTAAGTCCATTCACAATTGAATAACATTGTAGAACTACCTTCTTC
CAGGTTCTCATTGCCCTGTTAGCCACAAGTCTTGCCTAGTCTTTACAGCTGCACAAATAAGATT
TCATTAGAAAATACACCAGATTTTATTTATTCATGTGGTACCCTTTTCATACATGGTGAGAACT
GAGAAGTAATCCAGCAACTTACTTTGTGCACCTGGGTTAGAAATGGCAATGAGGCTCCAAAACC
TCATTATCCTTTCTAGCTCCTTAAAACTTCTTTGAGGTGTGCAATTGATTGACCCAAATTCTTA
TTCATTGCTCAT
Conservation Information
Conserved circRNAs osa_circ_038604
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021