Detail information of AT4G39180_circ_g.1


General Information
CircRNA Name AT4G39180_circ_g.1
ID in PlantcircBase ath_circ_035626
Alias 4:18245296-18245706
Organism Arabidpsis thaliana
Position chr4: 18245296-18245706  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT4G39180
Parent gene annotation Phosphatidylinositol/phosphatidylcholine transfer protein SFH2
Parent gene strand -
Alternative splicing 4_circ_igg.19 4_circ_ag.20 AT4G39080_circ_g.1 AT4G39080_circ_g.2 AT4G39080_circ_g.3 AT4G39080_circ_g.4 AT4G39080_circ_g.5 AT4G39080_circ_g.6 AT4G39080_circ_g.7 AT4G39080_circ_g.8 AT4G39080_circ_g.9 AT4G39080_circ_g.10 AT4G39080_circ_g.11 AT4G39080_circ_g.12 AT4G39080_circ_g.13 AT4G39090_circ_g.1 AT4G39090_circ_g.2 AT4G39090_circ_g.3 AT4G39090_circ_g.4 AT4G39090_circ_g.5 AT4G39090_circ_g.6 AT4G39090_circ_g.7 AT4G39090_circ_g.8 AT4G39100_circ_g.1 AT4G39100_circ_g.2 AT4G39100_circ_g.3 AT4G39100_circ_g.4 AT4G39120_circ_g.1 AT4G39120_circ_g.2 AT4G39120_circ_g.3 AT4G39120_circ_g.4 AT4G39120_circ_g.5 AT4G39120_circ_g.6 AT4G39120_circ_g.7 AT4G39120_circ_g.8 AT4G39140_circ_g.1 AT4G39140_circ_g.2 AT4G39150_circ_g.1 AT4G39150_circ_g.2 AT4G39150_circ_g.3 AT4G39150_circ_g.4 AT4G39150_circ_g.5 AT4G39150_circ_g.6 AT4G39150_circ_g.7 AT4G39150_circ_g.8 AT4G39150_circ_g.9 AT4G39150_circ_g.10 AT4G39150_circ_g.11 AT4G39170_circ_g.1 AT4G39170_circ_g.2 AT4G39170_circ_g.3 AT4G39170_circ_g.4 AT4G39170_circ_g.5 AT4G39170_circ_g.6 AT4G39200_circ_g.1 AT4G39200_circ_g.2 AT4G39200_circ_g.3
Support reads 1/2
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G39180.2:3
AT4G39180.1:3
AT4G39180.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGTCCAAAAACATAACTAAACCTCAGGGTAGTTATCGTTGTCGATTTTCTGAATACTCTGAAG
AAGATCTTTTGCAGCTTTGTTGAAGTTACTAAGCCCttggcgtcaatgatttctagaagtttgg
tttggtatttgttgccaagaacctgccattaatgaacataaagagtggttttaagtgaggccaa
tatgaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGCGTCAATGATTTCTAGAAGTTTGGTTTGGTATTTGTTGCCAAGAACCTGCCATTAATGAA
CATAAAGAGTGGTTTTAAGTGAGGCCAATATGAAACAGAGAAAAGTTGGGATGTCTGAAATGAG
AAGGGAAGCTTTACGTGAATCTTTGCTGTAGTCTTTGGGTCAAGGAAAGATTTCACTGTGTTCC
ATAAAAGCCTAAACCCACAACCAGCATTGATGATGAACATACGGTTCAGCGTCTACAACGAAAC
ACAAACACAGAGGTCATGTTGCTGCGTCAGAACCATTATAGAAACTCAAAGAAGAACGTCCAAA
AACATAACTAAACCTCAGGGTAGTTATCGTTGTCGATTTTCTGAATACTCTGAAGAAGATCTTT
TGCAGCTTTGTTGAAGTTACTAAGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.211577656
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020