Plant Circular RNA Database

Detail information of 2_circ_ag.4

			
						 General Information
					
						CircRNA Name
						2_circ_ag.4
					
						ID in PlantcircBase
						ath_circ_013529
					
						Alias
						2:7479313-7483381
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 7479313-7483381  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT2G17190_circ_g.1 AT2G17190_circ_g.2 AT2G17190_circ_g.3 AT2G17190_circ_g.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 AT2G17200_circ_g.1 AT2G17200_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_ag.4
ID in PlantcircBase	ath_circ_013529
Alias	2:7479313-7483381
Organism	Arabidpsis thaliana
Position	chr2: 7479313-7483381 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT2G17190_circ_g.1 AT2G17190_circ_g.2 AT2G17190_circ_g.3 AT2G17190_circ_g.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 AT2G17200_circ_g.1 AT2G17200_circ_g.2
Support reads	2
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAGAACTAAACTGACGAAGGAAATCTGGGTTCTGCATCATTTCCCTCAACTGAGGATTCGAATC
TAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAGctgcatcatctcgggagagctaaactgg
cgaaggaaatcagggttctgcatcatttccctcaactgaggattcatatctagcatgcttcgga
gttgtggg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGCATCATCTCGGGAGAGCTAAACTGGCGAAGGAAATCAGGGTTCTGCATCATTTCCCTCAAC
TGAGGATTCATATCTAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAGCTGGAAATGAAGGA
AATATTAAAATATTAAAGACAGCCTCACAATAGCTACAATGTCTAAAATTCAGATTACTGAAGG
CGCTACCTGATTCATGTACTGTGGATTGGAAAGTACGCTTTGCATCATCTGCGACATAGCGGGG
TTTTGCAGTATTTGGCTCAATTGAGAAGCATCTGGAGTCGCACCAAGAGGTGAGTCCGCTCCCA
GCATACCGAGTCCACCAAGGCCTCCAAGCCCACCAAGACCACCAAGTCCAGCATTTGTCCTTCC
AGGGGCAGTTGTCTGGCCTGTCAAGTAGCCCCACAATATGTTCTAAAATCTTTAGTGCATTACG
AGTAACAGTTAAACTAGAAACAAACAGCCAAGAAACTTATTCATAGACAAACTAGTCATAACAA
CAAACTGTGAGAACATGAACTCACCAATTATTACTATAATCAATACTATTCCTGACCAGTGTGG
TAAACATAAACTTTCACTTCTTAAAAACAAGCCACTCTTGCTTTTATATTTAATATTTCAACCT
TAAACTACAAGTAAAATCCCATATGAAATTAAGAGGATGAGAATACAGTTTCTTACCAGCCGTG
GCACCCCAAGGATTAGGAAGTGGATTTGCATTAGGTGTACCCGTTTCAGCATTCGGTGCCGAAA
TATTATTAGAAGTATCGCTTCCTTGTGTAGTAACCCCCTGGTTTCCCAGAAGAGCAGCAAATGG
ATTAGAGCTCGTATTGTTTCCAGCATTCTCGGACATAGTGGTAGCATTCATTAACGGTTCCTGG
ACATTTTCATACATACGCCTAAGCATGTTAAATCCCTCAGGCATAGACTCAATATTACTCATAG
CCCTATCAGTATTTCTCATCATTTCACGCATAAGCTCTGGGTTTCTCGCCGCTTCTAGAGTTTG
ACGAAGGATGCTTGGGTCATTGAGCACATGACCAAGCTCAGGATTGCGATCTACAAGCTCACGC
ATTTGAGGGTTATTCATAATCATACTCCTCATAAATTCTGGGTTGTTCATAAGATTCTGGATGG
CTGGAGTATTCATCATCTCTCTAATCATGTTAGGGTTCTGAGCTAGTTGTTGCTGTGCCTGCTC
AAGATCAGGAAGACCAGATCCAAATAATCCAGCCATAGCATTTCCACCACCCAAAGGATTAAAT
CCAAGGCCAGGGAACAAAGATTCACCTCCTCCGAGGTTTGAGCTATCATTTGAACCAACCGCTT
GAGGAGCAGTGGTTTGGTTTCCAGCATTTGCAGCGGGAGCAGAAGGAGAAGAAGGCACAAAACC
TCGAACCATATGAACGGTGTGATCAGCCTGCAAACCTATATATAAAATGGTCCACAGAGAAAGG
AAACATTGAGGCTCATGATGCAAAACAATAAAACGTGGAAACTATCCAACACAATCATATCAAC
AACAGCCATTGATGGAGAAAATATACATCCCAAGAAGATACATGATCATGAGAACATTAGGAAC
TCTAAGAATGGTATGAATCAATTATCGTATCACTAACTACATCTCCTTATTCTTCCCATAGAAG
GATTAAGCATACATCAAAACTCATAAAATCATCCATGCTTCTGTAAAAACCTAACATAAATCCA
ATGTTCCAACCCCCTAGAAACCCTATGAGATTTTCAGTCAAATTAAAGCAACGGAACAACAGAA
ATGAAACACGAAATGATCAGAAAATTACCATAGCTGAGGAGAGTCTGATCGTCTTTGAGGATAC
GTCCCTTGTAAATCAAACGCTGCTGATTTGCCGGCACATCGCTGTTCTGCGCAATTAACTCTTT
GAAAGACTCCACCGTGGAATCGAGGCTCGTCGTCACACTAAATTTCGTGCCATTGGAGCATCTG
ACGTTCACGGCAACAGCTACGCCTTCAGCAGTCAGCGGCTGCCTCGAATCTGCTTCACCACCCA
TTCTAATTTCAGATCCTAGTTCAACAAATCGCGAAATTGATCGGAGAATCAAAAGCTCTAAACC
TAGAAGAAAAAATCGTAGAAGAAGATTTGAGGAGACTCGAAGCTCTAATAAGTCGGTTCTGAAG
ATTTCTTGAGGAAAGGGATATAAATTATTTTTGGTCGAATAACAAATGAGACTGCAGAAAATTA
AAGAGTTATTTGGCCCCGAACGGCCAATTAAATGAGAATCCAGAAATGACTTGCGCTTCAGAGA
ACGTATCGACGACTCTTACTGGGTAAGATTGGGCCGGGTCGGGTCTAAATTGAGGCATTTGGTA
TATAGTTCAGGAAGGAATTGGCTGTAACTTGAATCTAATTGAAGATGATGAATCAACTAATTGG
ATATTCCTTTGCAACATGCCACTTCTCTCTTTGGGCAATTTGGTTTAACCTTTGAACCGGATCA
GAAGGAACCAAAAATTTAATGGGTTCAATTTCACTTTGATGTCTATAAACATTTACAGATGTTG
TATGTTGTAACAACTTGAAATAAGTTATCAAAGATAAACACCCAAGATATATAGGTTTAAGGGT
AGTTAAAGACGAAGAGTGACCACTGATAACAAATACCGTATTGATGCGGCTTTTCTATCAACAA
AGTTCACGATCCTATCATATATAAATTTTTATGAATTCGATGAATATATCATTACTGAAAAACA
CACATTCAAGCTGTTTATTCTATAACTGAGAAGCCAGATGGAGAGACATCAGTTCATGAACCTG
TATGCTACTGTCCGATACTCCCCAAGAGTCGTTCTACAGCAGCGTTAACGTTACCATTGGTTGC
AAGCAACGCCCTAATGTTCTCTGCTCTGTCATAGAATCCCATTTCCTGCAACTGTTGCAATTGA
GTAGCGTACCGCTCTTCAGGAGGAACTGGAATCAAACAGACAAGTTTCAGTGGAACCATCACAA
CAGATGCGTAAGCTAAAAAAAATTTGTAGTCTCTAACCATTGGATTGGTTCGTGCCACTCAGGC
CGCCAGCACCAAGACTGCCAAACATATTCATCAATAAATCCAGCCCCCCGTTATTTCCTGTCCC
CATCAGTATTGTCATTCTACTATTAACTTGTATACGATACAATATCTGCTAAAATAAAACATAC
ATGAAAGCAAAGAGAACTAAAGAGTAGCTGCTATACTACGTAACATAACTAAACCCTTTATACT
ACTGTAGAATAAATACATATAATATCTTTAAGAGTACCTGTGGCAGCACCAGTTTGCCCCGCAT
CCCTACAGAGAAGATAGATTTGGGAACATGAATGCGGATTGATGAAAATCAAAATATGGAGATT
AACACACATAGCTTATGCTAAAAGGCATAATCAAAAACAAACAAAATGTTATGAGCCCTATTCA
AGTGTATTCCAACGATTAAAATGCTTTATTTATAGCCTCTTTGATAGATGTTACTAGTGATCAG
CCCAGTAAATCATACAAGAGTTGCTGCATTAGTCATGGTTCAATCCTTTTCTTATTATAGAGAT
CGTTCACAACCAATCTTTTTAGCTAGTTACAACATTGTCTAAACACTAAACAACCCAAAAAACA
ATATGTAAAGGACATGTAAATGCTCAACTTTGTTTAAGCAAATCCAAACAACGAAGGGTTTTAA
CAAAACTTACTGGCTGGCTGTATTTCTATTCTGAGATAGTGATTGCTGTAGAGTCATCATTTGC
TGAAGACCAAAAAACAATAGAAAACATTAGGTTTAAGAAACTTCTTTACTTTGTCCCAAAAAAA
AAAAAGAAAAGAAACTTCTTTACTTGAAAATAGCTTAGATACAAAGAAATGTTTCTTTTGAGAG
ACTACCATGTTAAAAATTCATATGCATACAGACAATAGGGGACAAACTAACCTGCATCATCTCC
GGAGAACTAAACTGACGAAGGAAATCTGGGTTCTGCATCATTTCCCTCAACTGAGGATTCGAAT
CTAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAG
						
					

			
		

Sequences
Splice junction sequence	GAGAACTAAACTGACGAAGGAAATCTGGGTTCTGCATCATTTCCCTCAACTGAGGATTCGAATC TAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAGctgcatcatctcgggagagctaaactgg cgaaggaaatcagggttctgcatcatttccctcaactgaggattcatatctagcatgcttcgga gttgtggg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGCATCATCTCGGGAGAGCTAAACTGGCGAAGGAAATCAGGGTTCTGCATCATTTCCCTCAAC TGAGGATTCATATCTAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAGCTGGAAATGAAGGA AATATTAAAATATTAAAGACAGCCTCACAATAGCTACAATGTCTAAAATTCAGATTACTGAAGG CGCTACCTGATTCATGTACTGTGGATTGGAAAGTACGCTTTGCATCATCTGCGACATAGCGGGG TTTTGCAGTATTTGGCTCAATTGAGAAGCATCTGGAGTCGCACCAAGAGGTGAGTCCGCTCCCA GCATACCGAGTCCACCAAGGCCTCCAAGCCCACCAAGACCACCAAGTCCAGCATTTGTCCTTCC AGGGGCAGTTGTCTGGCCTGTCAAGTAGCCCCACAATATGTTCTAAAATCTTTAGTGCATTACG AGTAACAGTTAAACTAGAAACAAACAGCCAAGAAACTTATTCATAGACAAACTAGTCATAACAA CAAACTGTGAGAACATGAACTCACCAATTATTACTATAATCAATACTATTCCTGACCAGTGTGG TAAACATAAACTTTCACTTCTTAAAAACAAGCCACTCTTGCTTTTATATTTAATATTTCAACCT TAAACTACAAGTAAAATCCCATATGAAATTAAGAGGATGAGAATACAGTTTCTTACCAGCCGTG GCACCCCAAGGATTAGGAAGTGGATTTGCATTAGGTGTACCCGTTTCAGCATTCGGTGCCGAAA TATTATTAGAAGTATCGCTTCCTTGTGTAGTAACCCCCTGGTTTCCCAGAAGAGCAGCAAATGG ATTAGAGCTCGTATTGTTTCCAGCATTCTCGGACATAGTGGTAGCATTCATTAACGGTTCCTGG ACATTTTCATACATACGCCTAAGCATGTTAAATCCCTCAGGCATAGACTCAATATTACTCATAG CCCTATCAGTATTTCTCATCATTTCACGCATAAGCTCTGGGTTTCTCGCCGCTTCTAGAGTTTG ACGAAGGATGCTTGGGTCATTGAGCACATGACCAAGCTCAGGATTGCGATCTACAAGCTCACGC ATTTGAGGGTTATTCATAATCATACTCCTCATAAATTCTGGGTTGTTCATAAGATTCTGGATGG CTGGAGTATTCATCATCTCTCTAATCATGTTAGGGTTCTGAGCTAGTTGTTGCTGTGCCTGCTC AAGATCAGGAAGACCAGATCCAAATAATCCAGCCATAGCATTTCCACCACCCAAAGGATTAAAT CCAAGGCCAGGGAACAAAGATTCACCTCCTCCGAGGTTTGAGCTATCATTTGAACCAACCGCTT GAGGAGCAGTGGTTTGGTTTCCAGCATTTGCAGCGGGAGCAGAAGGAGAAGAAGGCACAAAACC TCGAACCATATGAACGGTGTGATCAGCCTGCAAACCTATATATAAAATGGTCCACAGAGAAAGG AAACATTGAGGCTCATGATGCAAAACAATAAAACGTGGAAACTATCCAACACAATCATATCAAC AACAGCCATTGATGGAGAAAATATACATCCCAAGAAGATACATGATCATGAGAACATTAGGAAC TCTAAGAATGGTATGAATCAATTATCGTATCACTAACTACATCTCCTTATTCTTCCCATAGAAG GATTAAGCATACATCAAAACTCATAAAATCATCCATGCTTCTGTAAAAACCTAACATAAATCCA ATGTTCCAACCCCCTAGAAACCCTATGAGATTTTCAGTCAAATTAAAGCAACGGAACAACAGAA ATGAAACACGAAATGATCAGAAAATTACCATAGCTGAGGAGAGTCTGATCGTCTTTGAGGATAC GTCCCTTGTAAATCAAACGCTGCTGATTTGCCGGCACATCGCTGTTCTGCGCAATTAACTCTTT GAAAGACTCCACCGTGGAATCGAGGCTCGTCGTCACACTAAATTTCGTGCCATTGGAGCATCTG ACGTTCACGGCAACAGCTACGCCTTCAGCAGTCAGCGGCTGCCTCGAATCTGCTTCACCACCCA TTCTAATTTCAGATCCTAGTTCAACAAATCGCGAAATTGATCGGAGAATCAAAAGCTCTAAACC TAGAAGAAAAAATCGTAGAAGAAGATTTGAGGAGACTCGAAGCTCTAATAAGTCGGTTCTGAAG ATTTCTTGAGGAAAGGGATATAAATTATTTTTGGTCGAATAACAAATGAGACTGCAGAAAATTA AAGAGTTATTTGGCCCCGAACGGCCAATTAAATGAGAATCCAGAAATGACTTGCGCTTCAGAGA ACGTATCGACGACTCTTACTGGGTAAGATTGGGCCGGGTCGGGTCTAAATTGAGGCATTTGGTA TATAGTTCAGGAAGGAATTGGCTGTAACTTGAATCTAATTGAAGATGATGAATCAACTAATTGG ATATTCCTTTGCAACATGCCACTTCTCTCTTTGGGCAATTTGGTTTAACCTTTGAACCGGATCA GAAGGAACCAAAAATTTAATGGGTTCAATTTCACTTTGATGTCTATAAACATTTACAGATGTTG TATGTTGTAACAACTTGAAATAAGTTATCAAAGATAAACACCCAAGATATATAGGTTTAAGGGT AGTTAAAGACGAAGAGTGACCACTGATAACAAATACCGTATTGATGCGGCTTTTCTATCAACAA AGTTCACGATCCTATCATATATAAATTTTTATGAATTCGATGAATATATCATTACTGAAAAACA CACATTCAAGCTGTTTATTCTATAACTGAGAAGCCAGATGGAGAGACATCAGTTCATGAACCTG TATGCTACTGTCCGATACTCCCCAAGAGTCGTTCTACAGCAGCGTTAACGTTACCATTGGTTGC AAGCAACGCCCTAATGTTCTCTGCTCTGTCATAGAATCCCATTTCCTGCAACTGTTGCAATTGA GTAGCGTACCGCTCTTCAGGAGGAACTGGAATCAAACAGACAAGTTTCAGTGGAACCATCACAA CAGATGCGTAAGCTAAAAAAAATTTGTAGTCTCTAACCATTGGATTGGTTCGTGCCACTCAGGC CGCCAGCACCAAGACTGCCAAACATATTCATCAATAAATCCAGCCCCCCGTTATTTCCTGTCCC CATCAGTATTGTCATTCTACTATTAACTTGTATACGATACAATATCTGCTAAAATAAAACATAC ATGAAAGCAAAGAGAACTAAAGAGTAGCTGCTATACTACGTAACATAACTAAACCCTTTATACT ACTGTAGAATAAATACATATAATATCTTTAAGAGTACCTGTGGCAGCACCAGTTTGCCCCGCAT CCCTACAGAGAAGATAGATTTGGGAACATGAATGCGGATTGATGAAAATCAAAATATGGAGATT AACACACATAGCTTATGCTAAAAGGCATAATCAAAAACAAACAAAATGTTATGAGCCCTATTCA AGTGTATTCCAACGATTAAAATGCTTTATTTATAGCCTCTTTGATAGATGTTACTAGTGATCAG CCCAGTAAATCATACAAGAGTTGCTGCATTAGTCATGGTTCAATCCTTTTCTTATTATAGAGAT CGTTCACAACCAATCTTTTTAGCTAGTTACAACATTGTCTAAACACTAAACAACCCAAAAAACA ATATGTAAAGGACATGTAAATGCTCAACTTTGTTTAAGCAAATCCAAACAACGAAGGGTTTTAA CAAAACTTACTGGCTGGCTGTATTTCTATTCTGAGATAGTGATTGCTGTAGAGTCATCATTTGC TGAAGACCAAAAAACAATAGAAAACATTAGGTTTAAGAAACTTCTTTACTTTGTCCCAAAAAAA AAAAAGAAAAGAAACTTCTTTACTTGAAAATAGCTTAGATACAAAGAAATGTTTCTTTTGAGAG ACTACCATGTTAAAAATTCATATGCATACAGACAATAGGGGACAAACTAACCTGCATCATCTCC GGAGAACTAAACTGACGAAGGAAATCTGGGTTCTGCATCATTTCCCTCAACTGAGGATTCGAAT CTAGCATGCTTCGGAGTTGTGGGTTAAGACTCATAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.189935135

Conservation Information
Conserved circRNAs	NA
PMCS	0.189935135

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 2_circ_ag.4

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