Detail information of Os10g0410600_circ_g.2


General Information
CircRNA Name Os10g0410600_circ_g.2
ID in PlantcircBase osa_circ_006782
Alias NA
Organism Oryza sativa
Position chr10: 14256467-14260157  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0410600
Parent gene annotation Similar to Serine/threonine protein phosphatase. (Os10t0410600-0
1);Similar to Phosphoprotein phosphatase 2A isoform 4. (Os10t041
0600-02)
Parent gene strand +
Alternative splicing Os10g0410600_circ_g.1 Os10g0410600_circ_g.3 Os10g0410600_circ_g.4 Os10g0410600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0410600-02:9
Os10t0410600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCGTGACCATATTCAGTGCACCTAATTATTGTTATCGCTGTGGCAACATGGCATCCATCCTG
GAGGTTGATGACTGCAGGAATCACACATTTATTCAGgtcaagacgttgtgcgagaaggcgaagg
agatattgatggaagaaagcaacgttcaggtacggtggagctctcctgcgattatgccatgccc
tgcagtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAAGACGTTGTGCGAGAAGGCGAAGGAGATATTGATGGAAGAAAGCAACGTTCAGGTACGGT
GGAGCTCTCCTGCGATTATGCCATGCCCTGCAGTATGATGATGGTATGCGTGCTGGGCTGAAAG
TATTGATTGCCGGTTGCTTCTGATAAAAATGGTGACTGTGTGTGTGGCTCTAATCAGCCCGAGT
AACACCAGCGATATGGTGACTGTGCTGTTTGTAGTTGGCATGCTCATTTCAGTTTTTATTGTGA
GAGGATCTAGCTCGATATGGACATGAAAAATAATGGTTTTTTGCGGTATCATGCTTTTCCCATG
CAAGAAGTTGATATTTTTTTTATTTATTACTACCTCCGTTTCAGGTTATAAGATTTTCTAGCAT
TGCCCACATTCATATAGATGTTAATGAATCTAGATATATATGTGTGCCTAGATTTATTAACATC
TATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGTATCTGAGTGGGA
TTGGTATGAAGGTATCTTCCATCTGCGGATTATATTGTTACCGTCAGCACATTCTGTATGCTGG
TGGGTATTGGGAAGATATCTAGTGAAAAATGTGGGGGAAGATCTGAAATTAGGGTGAGTGACTT
TCAAGCCCATCACAACTCTAGGGTGTTTACAACAAGGATATGTTTCACCCCTCCAGCCAGCACG
CTCATATACCCAAAACTGCGATGTTTTCCTTCTGTACTTGCTCACCTTTTTTATTTCTTCGAGC
TTCAATGGAAACCTACATAATAAGATAATTTTCTTATTAAAATTACAGAGAACCTTATAGCTTC
AGTCTGGACATAGCATAGCCGCTCACATTTTGTTTTCATCTCTAGCAATTTAAATGTGTATAGC
TACAACCAAAAGGGTGACTTATGTCTGGTATTCCTTATTTTTTGTCAGCACAACTAATTAATCA
TTGATTGCACCACAAAGAACAATCTTTTATGTATATGCGACTAAGACAAGCATGGTGATGTTCT
GTACTTGTAACTATGCATGTTGAGGGGGCACAAATATTTTACCCAATGTCAACATATTAGGTAT
GCCTTTATGTTATAAGGTCTAGGAAAATATAAGATATGACTATAACCATTTGTTTACTTTACAT
ACAGCCAGTTAAGAGCCCAGTCACAATTTGTGGTGATATCCATGGGCAATTCCATGATCTAGTA
GAGCTCTTTCGGATTGGTGGGAAGGTACTCAATCCATTGGCATTAGTTTTGTTTCTTTCTGCTC
TCTTTGGTCTTTGTTTCATGCTTTAAAAGCTGACATTTGTTTTGTACTGTTTACCAGTGTCCAG
ATACAAATTATTTGTTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTTAC
AGTAAGTCTCCTGAGTTTTGATTTTGTTTGCTGAAATTTTAATTGAAGTTCAACAATGTCATGC
TTATGGTTTGTTTGTTTACGACGTTTGGCCCTACCATGTTTTACCATGTGCATCATGGTTTGGC
AGCTCTTTGTTTCAAACCTAGCAGATGTATCGGCAATATTTGTGTTTAAGTTAATGGTATTGAA
GCCTAATTTCTTTTGTATTACTTGTTGACATGATGTGGTACCATTGCCCAGCTTTTGGTTGCAC
TGAAGGTGCGCTACCCACAGCGGATTACAATCCTTCGTGGAAACCATGAGAGTCGGCAGGTATG
TAGATTTCATCATGCCCATGAGATGATTCTATTGTTTGTTTTCTTTTCCCGCCCTCAAATAAAT
TTAAAACAGAAACCTTCTCATTCTAAAATGCAACCTTTCTTCTTAAACCATTTCTTCATTTGGA
CTCATCTAGATGATGTTTGCTCTTCATTCCATCTTTGTTTAAACTGTCTTGAAATCTTCAATAA
TTGCAGATCACACAGGTGTATGGATTCTACGACGAATGCCTACGAAAGTGAGTCAGTTTAGGTG
CTTGAAAGTCTACTTATTCTGTATCTATGCCAAAGTTAATAGTTTGGAAAACTCTAGTCTATCT
AAGTTGATTTTTGTAGTATTGACTTGTGAATACAAAGTGGACAAGCTTGATTTTTTTTATTGAT
TGATCTTGTTCTGCTTTTTGATTAGGTATGGAAGTGCAAATGTCTGGAAGATCTTCACCGATCT
TTTTGACTATTTTCCATTGACAGCATTGGTGCGTGCTCAACTTGTAGTCCTCTTCCTTCTATGA
TTTTTTTTTCTATTGTTCTTTTAAAATTGACATTCTGTATGAACATTGCTCAATGTTCTATACG
AAAATCTGAAGCCAATACCAGATTAAGTTAGTCTCAGATGAAACCCACTTATTATCATCTATGC
ATGTGCTACTTTATCAACTTTTGGCAACCACTACTCTCTAAAATAAAATCTGGCCTCAGTAGTC
TAAACGTGTGTCCTCTTTGGACTGATTAGTTTCTGGTGCTTGTAGATAATTTTTGGATTGTTTC
TTGAATGAGTTTTGTCTCCAAGGGGGTCAATAATGCTGGCATCCCTTGTGTCACTGCCTTAATT
ACTGATTAAGCTTTTCCTCTTCCTGAAAACCAAAATTGCTGTAACAACTGTAGGCAACCAAGTG
TTTATGCAGCCATAATTGTTGGTTCTTTCCTGTTCCTTTTGTTTCCTGGAGTTGATAATATATG
TGCAAGACCAGTTGAAATTCTTTATTTGATCTATCATTTTTTACCTGTTGATTGGCCTGTAGAA
TTTTAACTTGGTGTTTCCTCTTAATAACCAGTTGATGTTTCTGTTCTCGCTCAGAAGTTTAGAA
ATCATTTTTTATTTGTTCAGAAAATTTTATTGATGTTAAATTATTGTCTTGGTTGAAGGTTGAA
TCAGAGATTTTCTGCCTCCATGGTGGTTTATCGCCATCAATCGACAATCTTGATAGTGTTCGCA
GCTTAGATCGTGTTCAAGAGGTCCCTCATGAGGGACCAATGTGTGATCTTCTATGGTCTGACCC
GGATGATCGATGCGGTTGGGGCATATCTCCTCGTGGTGCTGGCTACACTTTTGGCCAGGTACTA
AATACTCTATTTTCCATTAATTTTCTTTCATCTATTAATAGACTATCTGTTCTGTTCTCAACCG
TACACATTCAATTTTTCAGGACATATCGGAGCAGTTTAACCATACCAATAATCTCAAACTTGTA
GCCCGGGCTCATCAATTAGTTATGGAAGGATATAACTGGGCGCACGTAAGTTGCTTAGCATAGA
TTTAAGAGAGAATTTCTTGTGTACCCCTGAAATTTCACCTAATCCCTTCTACGCCCTTGAATTT
TGCTCATTCCCTTGCATACCCATGAATTTTAGTTTTGATCTCTTCCATGCCCTTTCCGCTAGTT
GACCGGGCGTAGAAGGGATCCAAACTAAAATTCAGGGGTACATAAGGGAATGAGCAAAATTCAG
GGGCATATAAGGGATTAGGTGAACTTTCGTGGGTACATAGGGAATTTTCTCATTTTTCTAGATT
TAATTTTGTTGTTGATTTTGCTACCGAACTAGCATTGTCTTATTTATTCTTCACCACGCACAGG
AACAAAAGGTCGTGACCATATTCAGTGCACCTAATTATTGTTATCGCTGTGGCAACATGGCATC
CATCCTGGAGGTTGATGACTGCAGGAATCACACATTTATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.124732125
Functional Information
Coding potential Y
Potential coding position 14256504-14260154(+)
14260130-14256500(+)
14257675-14259684(-)
Potential amino acid sequence MEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVAL
KVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLH
GGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHT
NNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQVKTLCEK
AKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVT
LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESE
IFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISE
QFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQVK
TLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYS
VETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTA
LVESEIFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFG
QDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHT
FIQVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVD
RGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDY
FPLTALVESEIFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGA
GYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDD
CRNHTFIQ(+)
MTAGITHLFRSRRCARRRRRY*(+)
MELPMDITTNCDWALNWLNVAFFHQYLLRLLAQRLDLNKCVIPAVINLQDGCHVATAITIIRCT
EYGHDLLFVRPVISFHN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017