Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os10g0410600_circ_g.2 |
| ID in PlantcircBase | osa_circ_006782 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr10: 14256467-14260157 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os10g0410600 |
| Parent gene annotation |
Similar to Serine/threonine protein phosphatase. (Os10t0410600-0 1);Similar to Phosphoprotein phosphatase 2A isoform 4. (Os10t041 0600-02) |
| Parent gene strand | + |
| Alternative splicing | Os10g0410600_circ_g.1 Os10g0410600_circ_g.3 Os10g0410600_circ_g.4 Os10g0410600_circ_g.5 |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os10t0410600-02:9 Os10t0410600-01:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.124732125 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
14256504-14260154(+) 14260130-14256500(+) 14257675-14259684(-) |
| Potential amino acid sequence |
MEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVAL KVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESEIFCLH GGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHT NNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQVKTLCEK AKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYSVETVT LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVESE IFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISE QFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHTFIQVK TLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDRGYYS VETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTA LVESEIFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFG QDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCRNHT FIQVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVD RGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDY FPLTALVESEIFCLHGGLSPSIDNLDSVRSLDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGA GYTFGQDISEQFNHTNNLKLVARAHQLVMEGYNWAHEQKVVTIFSAPNYCYRCGNMASILEVDD CRNHTFIQ(+) MTAGITHLFRSRRCARRRRRY*(+) MELPMDITTNCDWALNWLNVAFFHQYLLRLLAQRLDLNKCVIPAVINLQDGCHVATAITIIRCT EYGHDLLFVRPVISFHN*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |