Detail information of Os01g0151400_circ_ag.1


General Information
CircRNA Name Os01g0151400_circ_ag.1
ID in PlantcircBase osa_circ_000366
Alias NA
Organism Oryza sativa
Position chr1: 2779211-2783650  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0151400_circ_g.1 Os01g0151400_circ_g.2
Support reads 7
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCGTCGGCGGCGGCGCGTTCATCGTCGCCAGGGACGCCGCCTCCGGCGACGCCGTCGCCTTC
GACGCCCGCGAGACCGCGCCGGCCGCGGCCACGCCGgacatgtacgcgggcaacccgacctcca
agtacaagggcgcgctcgccatgggcgtccccggcgagctcgccggcctccacgccgcgtggtc
ccgctacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACATGTACGCGGGCAACCCGACCTCCAAGTACAAGGGCGCGCTCGCCATGGGCGTCCCCGGCG
AGCTCGCCGGCCTCCACGCCGCGTGGTCCCGCTACGGCAGGCTGCCGTGGAAGGACCTCTTCGC
GCCGGCGATCAAGCTAGCGCGGGACGGCTTCACGGTGGTGCCGCCCGTCGCCGGCGCGCTCAAG
GAGGCGGAGCGGGACGTGCTCGCCGACCCGGGCCTCCGCGCCGTGTTCGCGCCGCAGGGGAGGA
TCCTCGCCGCCGGCGAGGTGTGCCGCAACCCGGCGCTCGCGGACACGCTTGAGGCCGTCGCCAG
CGGCGGCGTCGAGGCGTTCTACGGCGGCGCCATCGGCGAGAGGTTCGTCGCCGACGTGCGGCGC
GCCGGGGGCATCGCGACGGTGGACGACCTGAGGGCGTACAAGGTCGAGGTGAGCGACGCCATGC
GCGCCGACGCCATGGGATACACTTTCCTCGGCATGCCGCCGCCTTCCAGCGGCACAGTCGGAAT
GGCTCTGGTCAGTATCAAATTCCCAGTCAATTTCGATTATTTGTTCATCCCTCGATCGATCCAT
ATCAAACTTGACATGATTAATCGCAGGTTTTGAACATCTTGGATGGATACAAATCGCTCGAGTT
CTTGAAAGGGTTTCTTGGCGTGCACCGGTTCATCGAGGCGCTGAAGCACATGCTGGCCATCAGG
ATGGCTCTCGGCGACCCTGACTACGTCAACGTCGCCGGCAACGTCTCCCAGATGCTCTCGCCGG
CGTTCGCCGACAAAATCCGGCAGCGGATCGTCGACAACACTACGTTCCCTCCCAGTTACTACTT
CCCAAAGTAATTCTCATCTCAGAAATGAACGTTTCTTTCAGAAGTTAGCTAGAGCAGTTTTAGT
GATGAGATTTTGGTTTTTGTGTGATCAGATGGAGCCAGCTGAATGACCACGGGACGAGCCACCT
CTGCGTCGTCGACGGCGACCGGAACGCGGTGGCGATGACGACGACGGTGAACTCTTACTTCGGG
GCGCACGTGCTGTCGCCGTCGACGGGCATCGTGCTGAACAACGAGATGGACGACTTCTCCGTGC
CGGCGGAGCGGACGCCGGACCACCTCCCGCCGGCGCCGGCGAACTTCATCGCTCCGGGAAAACG
GCCTCTCTCCTCCATGACGCCGACGATCATACTAAAGGCAAGCATATAGTAGTAACTACTAACC
ATTTCGCTGACGCTGACGAGCTCGCCGATGCTGACCACTGCAGTGCTATCTGTGCAGAACGGAC
AGCTCGCCGGAGTAGTCGGCGGCAGTGGCGGGACGAACATCATCGCGACGGCGGCCCAGGTGTT
CGTGAACCATTTCATCGTCGGCATGCACCCGCTCGCCGCCGTCCAGCATCCCAGAGTCTACCAC
AAGGCAAGCACGCATGCATCAATTAATTACCTTAATCTCGTCGATTAATAAACAGCAATTAATT
AATTACTGGGAAACTCAATTAGGATATCTCTCACTTTTACATGTCGCTTTAAAAAGTTATCAAA
AAAATTTAAAAAAATTAGTAGAAATAGATCGTTATATAATATGTCACCTCACAAATAATACAAA
TTCAAATTTAACTTATACAATTAAAAAAAAATAACAAATTTGACTATAAATAGAACACATTATG
GTAATTATTTTTATTTTTTTCGAATTGTATATGTCGAATTTTAATTCACATATTTGTGAAAAGA
TATATTGTATATTGATCTATCTTGACAAATTCTTTTAAATTTTTTTATAACTTTTCGAACGGAC
ATGCACAAAAATCAATCTCATAATTACTGTCTGGTCGGTGGTATATATAATGCAGCTGGTGCCG
AACGTGGTGGTGTACGAGAACGAGACGGTGGTCGGCGGCGAGGTGATCGAGCTCAGCGGCGAGG
CGAGGGAGTTCCTGCGGCGGAGGGGCCACCGGCTGAGGAGCACGGGCTCCGGCGCCGTCTGCCA
GTTCATCGTGCAGGACTTGCTGGCGCCGGTCGGCTCGGCCGCCGACCGTCGGCAGCACGGCGGC
GGGAACGTCTTCCACGGGATGCTCACCGCCGTCAGCGACCCGAGGAAAGGCGGCAGACCTGCCG
GAATGTGATGGCGCATGCATGGCGCGCCACGGCATCGATTAGGCCCCCGTTTAGACAGCCGAAA
TTCTTACACGATTCATGTGAAAGCTGAACAAGTTTATATGGAAATTCTTCAAAATTTGTACAGC
AGTGGAACGGCCGGCTGTGGCGCTCGAGCACGGGGCAGCCATGGGTGGTTTGGTGGAGAAGATG
ACTGGAGGTACATGAGAGGATGAACGGAGAAGATTGGGTATTTTGGTCCCAAAAATTGAAAAAT
ACAGCCAAGGGATATTTCAGTTTTCAATGTTAGTGTCATATTTTTCAATTTCAACATGTATATA
GGCAAATAGTAATGCCAAATTGTAAAATTGCAAAATTTATAATGACGTGATCAATTTTTTTTTA
AAAAAAATCAGTTTGTCACAACTCTGAAAGATCAGAGCTCCTGATTCTGCCAATGGTTGTTTTC
CCAGCTGATTCTGTGATCAAGCTGCCGCTGCGGCTACGCAGTCCACTGCTTGCCACACTGTCCA
CACCATAATATTCTTTGCAGGTGCAGATTATTTTCTCTATTTCTTTCTTGCAAAAAAAATTATC
TGATATTTTGTCACTCTTAAGAAGATCAACTGTCAGAATTTAAATTTTGTGATCTCATAAATCT
GACAATAGTATACACATCTGTAGACCTGTCAATCTGCTGTGTACTCTGTTTCTTCTTTACTTAC
AAGAAAAAGGTAATTCCTGCGGCTTAATTTGGAAAGTGATATCCCAACAACAAGTAGCACTAAA
TCGAAATATTATTTTAAAAAAAAATCTGATGGGTTATTGCTTTTGATGAGTTAGAATCACGCCA
TTGAATCAGTACAATTGCGTCAAACATTCAAATTCTGAATTTTCATTTGATTAGATCTCTCTGT
TCTAAAATAAAACTATTTCTATCACTTAAACTTATCCTAAAATAAAACTATTTTCCACCTATTC
TCCCATCTTAACCAAATCACAAGTCACAAGTCATTTGATTAGCTCTAAAGCTATTTCTATCACT
TCTCAACTTGTCCCAAAATGGAGTATTCTCCATTTTATCTCTACCTATATTTTTTTCTCCTCAC
GAATCATAACTTTTCCTCAATATCCACTCACTTTTTTAATACCGATGTGTAGGGTTGTCAACGA
GCCGAGCTCGAGCGAGCTTGTCTGCCTAGGCTCGAGCTCGATACAAGCTCGAGCCGAGCCTATA
AAATGTTCAAGCTTTCTGATAGGCTCGGCTCGAGCTCGACTGCCGAGCTTGATTTTTAAGTAAA
ACAACATATATTTGAAAGATAATCTTTAAAAATATAATTAATTTTTAGTTCATCATATTAATAT
AAGAGGAAAAAAGAATAAAATAAATATATGATGTCAATATAAGCCATACAAATAACATATTTGA
TCTCCTAATTTATTAAATAATAACAAAAATCATATATTACTAAGCTCGTTGGAAGCTCAAGCTC
GGCTCGACAAAGCTCGCGAGCTTATAGAGAGGCTAGGGCTCGGCTCGTCAGGAGCTCGAGCTGA
GCTCGAATCGAGCCTAGGACAAGCCGAGCTCGAGCAGCTCGCGAGTCTCGAGCTTTTTTGACAG
CCCTACCGATGTGTCCCGCTCTATAACTGTTATATATTTTCTTTTTGTACGAAGGGAGTATAAT
TAAGAAAATAGTGAAAATATCAAGTACAATAGGATCTGTAGAATCATTGCCCAGTTAGACACAC
GATCATTATAAAAATCAAGCGTCTCATTGACAAGCCAACAAACGCACAGTGTGACAAGCTCTCG
CCATCCAAGAATCCCTCCCCTTCCTGACGACCTACCTGCCGATCGCCACTACAATCTCCGGCGA
TCCGGCGGCCATGGCCGCGCGAGGCGGCCTAGAGAACCCTCTCCTCGGCGGCGGCGCGGTTTCT
TCTCCGGACAGTCGGCGCCGCCGTCCGTGCACCGCGCTCGCCATCGCCGCCGCGGCGCTGCTCG
CCCTGGCGGCGTGCGTCGTGCTGCACCTGAGCTCGGGCGGCGATGATCGGAGCAGGGTGGTGTC
CGGCGGCGGCGGGGGTGTGAGACTGAGCCCGCACGAGGTGGAGGCCGGGGTGGGCGCGGTGGCG
ACGGACGACGGGCGGTGCTCGGAGGTGGGCGCCGCGGCGCTGCGCGCCGGCGGGCACGCGGTGG
ACGCGGCCGTGGCGGCGACGCTCTGCCTCGGCGTGGTGCACCCGATGTCGAGCGGCGTCGGCGG
CGGCGCGTTCATCGTCGCCAGGGACGCCGCCTCCGGCGACGCCGTCGCCTTCGACGCCCGCGAG
ACCGCGCCGGCCGCGGCCACGCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.343703652
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017