Plant Circular RNA Database

Detail information of orai.008G060800_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.008G060800_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000820
					
						Alias
						Chr08:9687226|9688929
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr08: 9687226-9688929  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.008G060800						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						13/28
					
						Tissues
						leaf/ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.008G060800.2:4
Gorai.008G060800.1:4

General Information
CircRNA Name	orai.008G060800_circ_g.1
ID in PlantcircBase	gra_circ_000820
Alias	Chr08:9687226\|9688929
Organism	Gossypium raimondii
Position	chrChr08: 9687226-9688929 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.008G060800
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	13/28
Tissues	leaf/ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.008G060800.2:4 Gorai.008G060800.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGACTCCAAACTGATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGCAGTT
GAACTAACGGATTCTAACAACATATCCAGCTCAAATctctaatgaatgtgctagatcagcatta
gcttcaggttcatgatccacactggcagaaatgctaggtctagatgctgttgcaccacaccctt
gaaattca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1111
Transcript exons: 9687226-9687314,9687461-9688099,9688445-9688699,9688802-
9688929
CTCTAATGAATGTGCTAGATCAGCATTAGCTTCAGGTTCATGATCCACACTGGCAGAAATGCTA
GGTCTAGATGCTGTTGCACCACACCCTGATGCCCCTTCAACACTGTTTCCAATGTGATTATTTT
CTGCTTCAATTGCAAGGGTGCCAAGTCCAGTTGCAAGCTTGTTAATTACAGGCCTTTTATCAGC
TATAAATTTGATCTCTTTCTCTAGCTTCGAATCATCGCTATAGACATGATCTGAGCGTTCTTCT
ACTCTAGTTTCCTCATTTGTCAAGCCATTTCTGCAAGAATTAGTTAGTTCCGGAAAACTGTTCC
CATCCCCATCACTAGTGGCCCTCTGTTGCCCGGATCTAACAGCAGCAACAGCTCTGGGATTTCC
ATCACTTTCAGCAATGCTTGATGCAGTGCAGTTTACAGCAGGACTTTGAGCTTTACCAGCATCA
TCAGTAACCTCTCTGCCACTAGGTCGAGGAGGAACACCCAACATCATCTCCAAGAAACTGGTCC
ATAACCTCATGACTTTATTTAGCTCTTCTCTGGTTGAGCAAATCTCTTCACATGAATATTCTAT
AAGTTTATATAGGTCTTCATGAATGCTGACATCCAAATAGTCATATTCAAGGTGCGGAGCTAGG
GGTTGTCTGTGACCAGCAACGCTAGCCACAAGAACATCATCCTCTTTCTGGTTCTTCTCTTTCA
ACTCCTTGATTTCAGCCACTAAAGATTTTGCACTCAAGTTCTTTGAATCCTGCTGCTTGAAATA
GAAACTGCGGTGATCAAGTGATTTGTAATGGTTTCTCGAATAAATTTCAGCCCAAACCTTGTTA
AAATCTAAACGGCACTTTGTCCACTCTTCTTGCTTCTGCTTCAAGCGAGTTAAAATGACAGGTA
AAGCAAGAGCAGGAGTTTTACGTAATATTTCCATTACATCGAGACCATGGTCACCATATAAACG
CTCAATGCACCTTAAATTTAGAACAGTAAAGTGGTCTTCTACACAAAATGGAGACTCCAAACTG
ATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGCAGTTGAACTAACGGATT
CTAACAACATATCCAGCTCAAAT
						
					

						Genomic sequence
						
							CTCTAATGAATGTGCTAGATCAGCATTAGCTTCAGGTTCATGATCCACACTGGCAGAAATGCTA
GGTCTAGATGCTGTTGCACCACACCCTTGAAATTCAAACTAATCTCAGTATCGCAGCATGATTT
TGGAAAGGAAGGAATAATTAGAAAAAAAAAAGTAATAACAAAACTAGGTTAGCAAAGAAGATAA
TCATGGAAATGATTTTCATGTTAAATTTTTCTGTCATACACACCTGATGCCCCTTCAACACTGT
TTCCAATGTGATTATTTTCTGCTTCAATTGCAAGGGTGCCAAGTCCAGTTGCAAGCTTGTTAAT
TACAGGCCTTTTATCAGCTATAAATTTGATCTCTTTCTCTAGCTTCGAATCATCGCTATAGACA
TGATCTGAGCGTTCTTCTACTCTAGTTTCCTCATTTGTCAAGCCATTTCTGCAAGAATTAGTTA
GTTCCGGAAAACTGTTCCCATCCCCATCACTAGTGGCCCTCTGTTGCCCGGATCTAACAGCAGC
AACAGCTCTGGGATTTCCATCACTTTCAGCAATGCTTGATGCAGTGCAGTTTACAGCAGGACTT
TGAGCTTTACCAGCATCATCAGTAACCTCTCTGCCACTAGGTCGAGGAGGAACACCCAACATCA
TCTCCAAGAAACTGGTCCATAACCTCATGACTTTATTTAGCTCTTCTCTGGTTGAGCAAATCTC
TTCACATGAATATTCTATAAGTTTATATAGGTCTTCATGAATGCTGACATCCAAATAGTCATAT
TCAAGGTGCGGAGCTAGGGGTTGTCTGTGACCAGCAACGCTAGCCACAAGAACATCATCCTCTT
TCTGGTTCTTCTCTTTCAACTCCTTGATTTCAGCCACTAAAGCTGCAATTAGGAAAAGCGATCA
ACGAGGATAGACAAGAAAGTAATAGAATATAGAGCAGAATAGAAATGAACACAATATCTTCAAG
AGACCATGGAATAGCATGCCCATACATTTAGAATCTAACAGACTTTTTGATTCAGTAGAAACGA
AAACATTCCATGAACTCTTCAGCTAGATATTGTAACAAAAGATTCATATTAAAGATGTAGTTAA
ATGGTTTCTAAATCTACTCTTTAAGACAAAATGTTAGAACAAGTTGTTAAGAATCATCCATCAA
TCTTTGAATCTAATTTTGAAACATAGGAAAATGTAGCATGATGTTTTGATAAAGAAATTTCACT
TACATTTTGCACTCAAGTTCTTTGAATCCTGCTGCTTGAAATAGAAACTGCGGTGATCAAGTGA
TTTGTAATGGTTTCTCGAATAAATTTCAGCCCAAACCTTGTTAAAATCTAAACGGCACTTTGTC
CACTCTTCTTGCTTCTGCTTCAAGCGAGTTAAAATGACAGGTAAAGCAAGAGCAGGAGTTTTAC
GTAATATTTCCATTACATCGAGACCATGGTCACCATATAAACGCTCAATGCACCTTAAATTTAG
AACTGCAGTAAGTGGTTCAGAAGAAGCAAAAGTTAAAAAGACGAGAAATGTACACATAGCAGAG
ACTCACACATAATCTAAACAATCTAGCAAGAAATACGAACCAGTAAAGTGGTCTTCTACACAAA
ATGGAGACTCCAAACTGATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGC
AGTTGAACTAACGGATTCTAACAACATATCCAGCTCAAAT
						
					

			
		

Sequences
Splice junction sequence	AGACTCCAAACTGATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGCAGTT GAACTAACGGATTCTAACAACATATCCAGCTCAAATctctaatgaatgtgctagatcagcatta gcttcaggttcatgatccacactggcagaaatgctaggtctagatgctgttgcaccacaccctt gaaattca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1111 Transcript exons: 9687226-9687314,9687461-9688099,9688445-9688699,9688802- 9688929 CTCTAATGAATGTGCTAGATCAGCATTAGCTTCAGGTTCATGATCCACACTGGCAGAAATGCTA GGTCTAGATGCTGTTGCACCACACCCTGATGCCCCTTCAACACTGTTTCCAATGTGATTATTTT CTGCTTCAATTGCAAGGGTGCCAAGTCCAGTTGCAAGCTTGTTAATTACAGGCCTTTTATCAGC TATAAATTTGATCTCTTTCTCTAGCTTCGAATCATCGCTATAGACATGATCTGAGCGTTCTTCT ACTCTAGTTTCCTCATTTGTCAAGCCATTTCTGCAAGAATTAGTTAGTTCCGGAAAACTGTTCC CATCCCCATCACTAGTGGCCCTCTGTTGCCCGGATCTAACAGCAGCAACAGCTCTGGGATTTCC ATCACTTTCAGCAATGCTTGATGCAGTGCAGTTTACAGCAGGACTTTGAGCTTTACCAGCATCA TCAGTAACCTCTCTGCCACTAGGTCGAGGAGGAACACCCAACATCATCTCCAAGAAACTGGTCC ATAACCTCATGACTTTATTTAGCTCTTCTCTGGTTGAGCAAATCTCTTCACATGAATATTCTAT AAGTTTATATAGGTCTTCATGAATGCTGACATCCAAATAGTCATATTCAAGGTGCGGAGCTAGG GGTTGTCTGTGACCAGCAACGCTAGCCACAAGAACATCATCCTCTTTCTGGTTCTTCTCTTTCA ACTCCTTGATTTCAGCCACTAAAGATTTTGCACTCAAGTTCTTTGAATCCTGCTGCTTGAAATA GAAACTGCGGTGATCAAGTGATTTGTAATGGTTTCTCGAATAAATTTCAGCCCAAACCTTGTTA AAATCTAAACGGCACTTTGTCCACTCTTCTTGCTTCTGCTTCAAGCGAGTTAAAATGACAGGTA AAGCAAGAGCAGGAGTTTTACGTAATATTTCCATTACATCGAGACCATGGTCACCATATAAACG CTCAATGCACCTTAAATTTAGAACAGTAAAGTGGTCTTCTACACAAAATGGAGACTCCAAACTG ATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGCAGTTGAACTAACGGATT CTAACAACATATCCAGCTCAAAT
Genomic sequence	CTCTAATGAATGTGCTAGATCAGCATTAGCTTCAGGTTCATGATCCACACTGGCAGAAATGCTA GGTCTAGATGCTGTTGCACCACACCCTTGAAATTCAAACTAATCTCAGTATCGCAGCATGATTT TGGAAAGGAAGGAATAATTAGAAAAAAAAAAGTAATAACAAAACTAGGTTAGCAAAGAAGATAA TCATGGAAATGATTTTCATGTTAAATTTTTCTGTCATACACACCTGATGCCCCTTCAACACTGT TTCCAATGTGATTATTTTCTGCTTCAATTGCAAGGGTGCCAAGTCCAGTTGCAAGCTTGTTAAT TACAGGCCTTTTATCAGCTATAAATTTGATCTCTTTCTCTAGCTTCGAATCATCGCTATAGACA TGATCTGAGCGTTCTTCTACTCTAGTTTCCTCATTTGTCAAGCCATTTCTGCAAGAATTAGTTA GTTCCGGAAAACTGTTCCCATCCCCATCACTAGTGGCCCTCTGTTGCCCGGATCTAACAGCAGC AACAGCTCTGGGATTTCCATCACTTTCAGCAATGCTTGATGCAGTGCAGTTTACAGCAGGACTT TGAGCTTTACCAGCATCATCAGTAACCTCTCTGCCACTAGGTCGAGGAGGAACACCCAACATCA TCTCCAAGAAACTGGTCCATAACCTCATGACTTTATTTAGCTCTTCTCTGGTTGAGCAAATCTC TTCACATGAATATTCTATAAGTTTATATAGGTCTTCATGAATGCTGACATCCAAATAGTCATAT TCAAGGTGCGGAGCTAGGGGTTGTCTGTGACCAGCAACGCTAGCCACAAGAACATCATCCTCTT TCTGGTTCTTCTCTTTCAACTCCTTGATTTCAGCCACTAAAGCTGCAATTAGGAAAAGCGATCA ACGAGGATAGACAAGAAAGTAATAGAATATAGAGCAGAATAGAAATGAACACAATATCTTCAAG AGACCATGGAATAGCATGCCCATACATTTAGAATCTAACAGACTTTTTGATTCAGTAGAAACGA AAACATTCCATGAACTCTTCAGCTAGATATTGTAACAAAAGATTCATATTAAAGATGTAGTTAA ATGGTTTCTAAATCTACTCTTTAAGACAAAATGTTAGAACAAGTTGTTAAGAATCATCCATCAA TCTTTGAATCTAATTTTGAAACATAGGAAAATGTAGCATGATGTTTTGATAAAGAAATTTCACT TACATTTTGCACTCAAGTTCTTTGAATCCTGCTGCTTGAAATAGAAACTGCGGTGATCAAGTGA TTTGTAATGGTTTCTCGAATAAATTTCAGCCCAAACCTTGTTAAAATCTAAACGGCACTTTGTC CACTCTTCTTGCTTCTGCTTCAAGCGAGTTAAAATGACAGGTAAAGCAAGAGCAGGAGTTTTAC GTAATATTTCCATTACATCGAGACCATGGTCACCATATAAACGCTCAATGCACCTTAAATTTAG AACTGCAGTAAGTGGTTCAGAAGAAGCAAAAGTTAAAAAGACGAGAAATGTACACATAGCAGAG ACTCACACATAATCTAAACAATCTAGCAAGAAATACGAACCAGTAAAGTGGTCTTCTACACAAA ATGGAGACTCCAAACTGATTTCATTTTCATTAATGCTGTTCAGCAAATCCTCGACACGCTTGGC AGTTGAACTAACGGATTCTAACAACATATCCAGCTCAAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							gar_circ_000749 ghi_circ_000412* 						
					
						PMCS
						0.93617612

Conservation Information
Conserved circRNAs	gar_circ_000749 ghi_circ_000412*
PMCS	0.93617612

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							9688917-9688926(-)
9688603-9687228(+)
						
						Potential amino acid sequence
						
							MLLESVSSTAKRVEDLLNSINENEISLESPFCVEDHFTVLNLRCIERLYGDHGLDVMEILRKTP
ALALPVILTRLKQKQEEWTKCRLDFNKVWAEIYSRNHYKSLDHRSFYFKQQDSKNLSAKSLVAE
IKELKEKNQKEDDVLVASVAGHRQPLAPHLEYDYLDVSIHEDLYKLIEYSCEEICSTREELNKV
MRLWTSFLEMMLGVPPRPSGREVTDDAGKAQSPAVNCTASSIAESDGNPRAVAAVRSGQQRATS
DGDGNSFPELTNSCRNGLTNEETRVEERSDHVYSDDSKLEKEIKFIADKRPVINKLATGLGTLA
IEAENNHIGNSVEGASGCGATASRPSISASVDHEPEANADLAHSLEI*(-)
MTGKARAGVLRNISITSRPWSPYKRSMHLKFRTVKWSSTQNGDSKLISFSLMLFSKSSTRLAVE
LTDSNNISSSNL*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	9688917-9688926(-) 9688603-9687228(+)
Potential amino acid sequence	MLLESVSSTAKRVEDLLNSINENEISLESPFCVEDHFTVLNLRCIERLYGDHGLDVMEILRKTP ALALPVILTRLKQKQEEWTKCRLDFNKVWAEIYSRNHYKSLDHRSFYFKQQDSKNLSAKSLVAE IKELKEKNQKEDDVLVASVAGHRQPLAPHLEYDYLDVSIHEDLYKLIEYSCEEICSTREELNKV MRLWTSFLEMMLGVPPRPSGREVTDDAGKAQSPAVNCTASSIAESDGNPRAVAAVRSGQQRATS DGDGNSFPELTNSCRNGLTNEETRVEERSDHVYSDDSKLEKEIKFIADKRPVINKLATGLGTLA IEAENNHIGNSVEGASGCGATASRPSISASVDHEPEANADLAHSLEI(-) MTGKARAGVLRNISITSRPWSPYKRSMHLKFRTVKWSSTQNGDSKLISFSLMLFSKSSTRLAVE LTDSNNISSSNL(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.008G060800_circ_g.1

Address

Any questions?

Supported by