Detail information of AT2G10940_circ_g.5


General Information
CircRNA Name AT2G10940_circ_g.5
ID in PlantcircBase ath_circ_013141
Alias NA
Organism Arabidpsis thaliana
Position chr2: 4311366-4311471  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ, circseq_cup
Parent gene AT2G10940
Parent gene annotation At2g10940/F15K19.1
Parent gene strand -
Alternative splicing AT2G10940_circ_g.1 AT2G10940_circ_g.2 AT2G10940_circ_g.3 AT2G10940_circ_g.4 AT2G10940_circ_g.6 AT2G10940_circ_g.7 AT2G10940_circ_g.8 AT2G10940_circ_g.9 AT2G10940_circ_g.10 AT2G10940_circ_g.11 AT2G10940_circ_g.12 AT2G10940_circ_g.13
Support reads 24
Tissues leaf, aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G10940.1:1
AT2G10940.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTTCCCGCCCCCTGATGGTGGCTTTACGCTCCCTGGCGGTGGAGGACAGTCctcccaacaag
tcgacgcaagcacctaacttcagcgtgtctattggacatgtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 106
Transcript exons: 4311366-4311471
CTTCCAACAAGTCGACGCAAGCACCTAACTTCAGCGTGTCTATTGGACATGTCGCCTTCCCGCC
CCCTGATGGTGGCTTTACGCTCCCTGGCGGTGGAGGACAGTC

Genomic sequence CTCCCAACAAGTCGACGCAAGCACCTAACTTCAGCGTGTCTATTGGACATGTCGCCTTCCCGCC
CCCTGATGGTGGCTTTACGCTCCCTGGCGGTGGAGGACAGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.167452202
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017