Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046595_circ_g.1 |
ID in PlantcircBase | zma_circ_009996 |
Alias | zma_circ_0003270 |
Organism | Zea mays |
Position | chr9: 97775383-97776904 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d046595 |
Parent gene annotation |
Putative sucrose-phosphate synthase family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d046595_T001:4 Zm00001d046595_T005:4 Zm00001d046595_T002:4 Zm00001d046595_T006:1 Zm00001d046595_T003:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.20799073 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
97775675-97776901(+) |
Potential amino acid sequence |
MSKTIGEETGSVCPVWPTVIHGHYASAGVAAALLSGALNVPMLFTGHFLGKDKLEELLKQGRQT REQINVTYKIMRRIEAEELSLDASEIIIASTRQEIEEQWNLYDGFEVMLARKLRALVKRGANCY GRYMPRMVIIPPGVEFGQLIHDFDMYGDEDNQSPALDPSIWFEIMRFFTNPRKPMILAIARPYS EKNIATLVKAFGECHPLRELANLTLIMGNREAISKMNKISAAVLTSVLTLIDEYDLYGQVAYPK LHKHSEVPDIYRLAARTKVKYVVELAKALSSCPGVYRVDLLTRQILAPNFDRGYGELDELLAST SFKNFRCERGENSGAHIIRIPFGPKDKHLAKENIWPFIQEFVDGALGHIVRMSKTIGEETGSVC PVWPTVIHGHYASAGVAAALLSGALNVPMLFTGHFLGKDKLEELLKQGRQTREQINVTYKIMRR IEAEELSLDASEIIIASTRQEIEEQWNLYDGFEVMLARKLRALVKRGANCYGRYMPRMVIIPPG VEFGQLIHDFDMYGDEDNQSPALDPSIWFEIMRFFTNPRKPMILAIARPYSEKNIATLVKAFGE CHPLRELANLTLIMGNREAISKMNKISAAVLTSVLTLIDEYDLYGQVAYPKLHKHSEVPDIYRL AARTKVKYVVELAKALSSCPGVYRVDLLTRQILAPNFDRGYGELDELLASTSFKNFRCERGENS GAHIIRIPFGPKDKHLAKENIWPFIQEFVDGALGHIVRMSKTIGEETGSVCPVWPTVIHGHYAS AGVAAALLSGALNVPMLFTGHFLGKDKLEELLKQGRQTREQINVTYKIMRRIEAEELSLDASEI IIASTRQEIEEQWNLYDGFEVMLARKLRALVKRGANCYGRYMPRMVIIPPGVEFGQLIHDFDMY GDEDNQSPALDPSIWFEIMRFFTNPRKPMILAIARPYSEKNIATLVKAFGECHPLRELANLTLI MGNREAISKMNKISAAVLTSVLTLIDEYDLYGQVAYPKLHKHSEVPDIYRLAARTKVKYVVELA KALSSCPGVYRVDLLTRQILAPNFDRGYGELDELLASTSFKNFRCERGENSGAHIIRIPFGPKD KHLAKENIWPFIQEFVDGALGHIVRMSKTIGEETGSVCPVWPTVIHGHYASAGVAAALLSGALN VPMLFTGHFLGKDKLEELLKQGRQTREQINVTYKIMRRIEAEELSLDASEIIIASTRQEIEEQW NLYDGFEVMLARKLRALVKRGANCYGRYMPRMVIIPPGVEFGQLIHDFDMYGDEDNQSPALDPS IWFEIMRFFTNPRKPMILAIARPYSEKNIATLVKAFGECHPLRELANLTLIMGNREAISKMNKI SAAVLTSVLTLIDEYDLYGQVAYPKLHKHSEVPDIYRLAARTK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |