Detail information of ENSRNA049447734_circ_ig.1


General Information
CircRNA Name ENSRNA049447734_circ_ig.1
ID in PlantcircBase osa_circ_041692
Alias NA
Organism Oryza sativa
Position chr4: 9105350-9105488  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000035177_circ_ig.1 EPlOSAG00000045576_circ_ig.1 ENSRNA049466614_circ_ig.1 ENSRNA049466614_circ_ig.2 EPlOSAG00000045720_circ_igg.1 EPlOSAG00000045720_circ_ig.1 EPlOSAG00000045720_circ_ig.2 EPlOSAG00000045720_circ_ig.3 EPlOSAG00000045720_circ_ig.4 EPlOSAG00000045720_circ_ig.5 ENSRNA049466486_circ_igg.1 ENSRNA049466486_circ_igg.2 ENSRNA049466486_circ_ig.1 ENSRNA049466486_circ_ig.2 ENSRNA049466486_circ_ig.3 ENSRNA049466486_circ_ig.4 EPlOSAG00000046976_circ_igg.1 EPlOSAG00000046976_circ_igg.2 EPlOSAG00000046976_circ_igg.3 ENSRNA049466581_circ_ig.1 ENSRNA049466581_circ_ig.2 ENSRNA049466581_circ_ig.3 ENSRNA049466581_circ_ig.4 ENSRNA049466581_circ_ig.5 ENSRNA049466581_circ_ig.6 ENSRNA049466581_circ_ig.7 ENSRNA049466581_circ_ig.8 ENSRNA049466581_circ_ig.9 ENSRNA049466581_circ_ig.10 ENSRNA049466581_circ_ig.11 ENSRNA049466739_circ_igg.1 ENSRNA049466739_circ_igg.2 ENSRNA049466739_circ_igg.3 ENSRNA049466739_circ_igg.4 ENSRNA049466581_circ_ig.5 EPlOSAG00000050521_circ_ig.1 EPlOSAG00000050521_circ_ig.2 EPlOSAG00000050521_circ_ig.3 EPlOSAG00000045310_circ_ig.1 EPlOSAG00000045310_circ_ig.2 EPlOSAG00000045909_circ_igg.1 EPlOSAG00000045909_circ_ig.1 EPlOSAG00000046110_circ_ig.1 EPlOSAG00000052314_circ_ig.1 EPlOSAG00000052680_circ_igg.1 ENSRNA049466845_circ_igg.1 ENSRNA049466845_circ_igg.2 EPlOSAG00000010432_circ_ig.1 ENSRNA049466845_circ_igg.2 EPlOSAG00000003054_circ_ig.1 EPlOSAG00000002531_circ_ig.1 EPlOSAG00000035066_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACAACGTAT
TGGTCttggaattattaaaagaagtctatggactgatatggattctacccattttgaccctctt
actgggaatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 139
Transcript exons: 9105350-9105488
TTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGG
GAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACA
ACGTATTGGTC

Genomic sequence TTGGAATTATTAAAAGAAGTCTATGGACTGATATGGATTCTACCCATTTTGACCCTCTTACTGG
GAATCACAATAGAAGTACTCGTAATTGTGTGGTTAGAAAGAGAAATATCCGCATCGATACAACA
ACGTATTGGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.678648321
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study