Detail information of BGIOSGA016174_circ_g.1


General Information
CircRNA Name BGIOSGA016174_circ_g.1
ID in PlantcircBase osi_circ_014261
Alias Chr04:16996797_17001303(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 14194153-14198659  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016174
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016174_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016174-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCAGGACCAGCTAGGGGATACTGCTGAAGCTGTTCAAGCAGCTGGTGAATTACTTGTACGA
TTGAAAGAGGCTGAGGAAGCAGAAGCACTTGCCCAGgattagagaggatgttagaactgcttgt
gtctatgttgaatcattgacaaaggagttagttttcactacaaaggatgtaacgcaactgttgg
tgaaggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTAGAGAGGATGTTAGAACTGCTTGTGTCTATGTTGAATCATTGACAAAGGAGTTAGTTTTC
ACTACAAAGGATGTAACGCAACTGTTGGTGAAGGTACATGCACGTCAATGTTGTCGTCTAAAGA
TTTGCTGATATGTTTCTCATATGTTTGTGCTGTTGAATATTGATCCTAATTTCTAATAGAGTTA
AATTTGTCACTTGTCGCTGTCAGACGTGCCTATTCTGAGCTAAAATAATTCACTGTTATGATTT
TTCTGAGCTAAAATACTTTGCCTTTTATTTATGTGTAAGATTTCGTCTTGTTTAATGTCTTATC
TGGCATATAACGTGTCCTTGTTAATTCTGCGGGCAGTGGAGAATGTTTACTTTACCTGAGTTCT
TGTTTTCTTCCAAGACAGTGTAGCATCTAGAAATAACAATGATGCAGTATTTGCAACAAGACGA
TTTTTATGAGACAAAGATTAGCAGATGCTGCATAGTTGTTCTAAAAAATTAATGACGAGCTGCA
TGCTTATTTCTTCCTAGTTGTTATTTCCAGTACCTGCCCATACACATAGAGCATATTCTTTCCT
CTTCTATTTAGGAACTTTGATTAATTCATATGTTGCAGGGCCTCTCAAATCGGAGGACCGGGGC
AACAAGCGCAAATGCAGACAGCTCACGCTCACATTGCGTTTTTACATGTGTCATCAAGTCTGAA
TCAAAGGTAGTTCTATTAATCATACTATCATGTACTTTCAACTTTTATTTGGTCATGTCCTTTT
CCTAGCGATCGTGATGCTGTATCTTATCCTGTTTATGTGAGCTGATAATTGTTCCGAGTGGGTT
TTCACTTCACCTGTCTGCATCTTATTTGTAGTTTATTTCATTCTGCTGAAGCATACGCCAAATG
CCAAATGTAGATGCTTGTGTGATCCCTGATAGCTTGAAGCCTTGAAGGCACATTTGGATAGTTT
AGGCATATAACTCTTCTTCTCCCAGCATCACATCCTGTTTCTTTGAGTATGATAAAATTGTCAT
GGAACACAATATTCTGTTTATGGCACTTGTTTGACTGTGTTTGCACTATGCAATATGCAAATTT
CAATATTGTAGCTGCACATGTTCAACTTTGATACGGACTGTCAACTTCTAGAAGAAGAGCTTCC
ATTGCTTATATAAATAGGATGTTTCTCTTTTGCATTCTTTTCTTCGCCGTTGTCTTCTGTAGTC
ATCCATATTTTGTTGTGATCGTATTATCCCATGATTTTCGTTGCATGGATAAAATGATAATGGG
CCAACCGGTTGCATTATTCAATCCAAATAATAGTAAACATGTTCTCTTAAACTGTTGCTAGTTC
TACTTTTGAATTTCTTTGTTCTTTAATGCCTTGTTATTGTTCTATAGAATCTGGAGGATGGCTC
AAACAGCACAAGAACAAGCCGGATCAACTTAGTAGATCTAGCTGGATCAGAACGACAAAAGTTA
ACCCATGCATTTGGTGATCGCCTAAAAGAAGCAGGAAATATAAACCGCTCACTTTCACAACTTG
GGTATGGTTCTGTTTATACATAACACTAAAGATAAAGGTTTATTTAACACATAATCTGACCATC
TTTGTCCTGATATAGTCTTTATTGATTATCTCATAGACTGTAATGCTTAAGGTCAGTATTTAAG
TAAATGGGTTGTAGTTTGTCATGCATGCATGGAAGTTATGTTTTGTGAAGTCTACTTTCATTAT
CATCTTTTTGTTACTGATATAAAGCTACAGTTCTGTTCTTGCTCACAACATATCAGATTTGTTT
TTCATCTGATTGCTAGTTTATTATATACATGTCTATTGTTTTGGGCACAAACCGATAACCGATA
TTAGTTATATAAATGATATATCTATTGTGCAGAGAGTTTTTTTATTTGATTGCTAGTTTATAAA
GCATTAACTGAGTGGGTAATGGGGTTAATCATGGAAAGAAACACCGTGTTATCAAGACGAAATG
TTTAGCACAGAATGAATTAAAATATACATTTATTTCAAAATGTAGTGTGCTTTAGTTTGATTAG
TCAAAATGTGGTGAGATGGAGAATCTTATTTTTATGCTTTTGGCCACTGCAGAAATTTGATCAA
CATATTGGCAGAAATATCACAGTCTGGAAAACAAAGGCATGTTCCATATCGAGATTCAAAGCTG
ACATTTCTATTGCAAGAATCACTGGGTGGCAATGCCAAACTTGCAATGATTTGTGCTGTTTCGC
CTTCTCAAAGGTACTACCAAGTAGAACCAAAAGCCACTTTTCTCTTCTTTTTAAATATTTGTCC
TGACTCCTGACTGTATTTTCAATATTGTAATGCAGCTGTAAGAGTGAAACATTAAGCACTCTTA
GATTTGCTCAACGTGCAAAATCTATAAAAAACAATGCTGTTGTCAATGAACAAAAGGAAGAAGA
TGTCAACATGCTGCGTGAGCAGATCAGGCAGTTAAAGGTATAATCGCGTTCTTGTTGTTGACTT
TGTTGTCTCCGTAATGTTTTGTTGTTCTGACTCAAGTTGTCCACTGGTGTCTTATTTTCTGTAT
GCTATGACTACATTGCAGGATGAACTTCATCGAATGAAGTCTGGAGGTTCAGATGGAAGCAACG
GCTGTTTTTCCACTGGATGGAATGCTAGGCGTAGTCTGCATCTACTCAAAATGAGTTTGAGTCG
TCCTACAACATTCCAAACTATCCATGAAGATAGTGGTGATGTGGAAATGGAAATCGATGAGAAT
GATGTTGAGAAGCCCTATAATCAAGACAATATGGTAATATCTCCTCCTGGAGATAAAGAATGTA
AAGAATTACAGGCTTCATTGAAAATTAATGGTGGCACTTCCCTTGATGTTTTTGATGGGGAGAA
TCTCATGCCAACAAAAAGGTCATGCTCTGATGACAGATATAAGTTAAATCTTGCTGCCAGTATA
CAGAGAGGGCTTCAAGTCATAGAAAATCATCAAAACAATGGAGCTTGGAGGAGAGCATCAGTTG
GGTTCAATGCTAGAATTGTGGATGTTCAGCCTTGCAAGGTTGATGTAGCGATCCAAACTGAGCC
AGAAGAATCTGAAGCAAGAGACAACCCTTTGGCTCTAATTTCTTCTCATGTACTTGGGACTTCT
GCTACCGTGAGCAATGATCCCAATGCATGCAGGGATCTGCAATTAGTACAATATGATGCAGGAA
TAACACGTGATGAACCAAAACAGCAACAAATTCTGAAAGTAAGTTTAAACAAAAGATATTTATA
TGCATTTTTTATGCCAGCTTATTAAAGTTACAATATCAGCATTTACAAATAATATTTGTCTGTA
TAGGCTGTGGAGAAGGTCTTGGCTGGAGCAATCAGGCGAGAGATGGCACGTGATGAACAGTGTG
TAAAGCAAGCTGCTGAAATCCAACAGCTAAATCGTTTGGTAGGTGCCTTAACTCTATTCTTTAA
CAATTAACTATGTGTTTTCTCTGTTCTGCTGTCTTAGTCATCCTGCTTGCAGGTACAACAATAC
AAGCACGAACGCGAGTGCAATGCAGTTATCGCCCAAACACGAGAAGGCAAAATTGCTAGGCTCG
AAAGTCTGATGGATGGAACTTTACCAACAGAAGAATTTATCAATGAGGAGTATCTATCTCTTAT
GAATGAGCACAAGGTTGCCTTTCACTGAACTTCCCATCCATTTCATTTCCTACAATGTGTACCA
CAGCTTATATTTTTTAAGTCATAACTTTCTTATTGGCTAATTTCCTTAAACTGATGCAAACAGA
TACTCCAACAGAAATATGAAAACCATCCTGAACTTCTACGTGCTGAAATCGAGCTAAAGAGACT
TCAGGAGGAACTGGAGCTGTGCCGGAATTACATTGACGAGAAGGAAGTTCTACAAGAAGAGATA
CAGGATCTAAAAAGTCATTTGCATTTTATGCTTTCGTCATCAGCATCGATTCGCAGGCTCTGGC
CTCCAGTGCAATTGTCCCAGGGCGTTGGTCCTTCACCTGTAACAAATGATGCTGATGGTGATAC
TAATGCTGTGGACACATCAGATTGGGCTGAAGCTGAGAGTAAATGGGTAACTCTCACAGAAGAA
CTTAGAGTTGAACTTGAAGCAAATAAATCTCTTGTAGGAAGGTTGCGGTCGGAATTGGAGTCTG
AAAAGAAGTGCTCGGAGGAAGTAAAGGAGGCATTACAAACAGCAATGCAAGGACATGCTAGAAT
CTTGGAACAGTATGCTGAACTTGAGGAGAGACACATTGGTTTGCTCGCAATGCATAGGAAGATC
CGTGAGGGTGTTGAAGATGTGAAGGCGAGAGCTGCAAAAGCTGGTGTCAAGGGTGCTGAATTGC
GGTTCATCAATTCCCTTGCTGCCGAAATGGCAGTTCTGAGAGCGGAAAACAAAGGCCTTCAGGA
CCAGCTAGGGGATACTGCTGAAGCTGTTCAAGCAGCTGGTGAATTACTTGTACGATTGAAAGAG
GCTGAGGAAGCAGAAGCACTTGCCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021