Detail information of AT2G32950_circ_g.5


General Information
CircRNA Name AT2G32950_circ_g.5
ID in PlantcircBase ath_circ_016188
Alias At_ciR5008
Organism Arabidpsis thaliana
Position chr2: 13978657-13981576  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene AT2G32950
Parent gene annotation FUS1
Parent gene strand +
Alternative splicing AT2G32950_circ_g.1 AT2G32950_circ_g.2 AT2G32950_circ_g.3 AT2G32950_circ_g.4 AT2G32950_circ_g.6 AT2G32950_circ_g.7 AT2G32950_circ_g.8 AT2G32950_circ_g.9 AT2G32950_circ_g.10 AT2G32950_circ_g.11 AT2G32950_circ_g.12 AT2G32950_circ_g.13 AT2G32950_circ_g.14
Support reads 2/1
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G32950.1:7
AT2G32950.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACATAGCAAGCAGTGATTATGAA
GGAATAGTAACAGTGTGGGATGTAACTACTAGGCAGctattgaagaaaacttcagctcggcatg
tgtcaaaaactgcatcgcccttggatcagtttcgggaagcactacaaagggtcggttcttaaca
agcttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTGAAGAAAACTTCAGCTCGGCATGTGTCAAAAACTGCATCGCCCTTGGATCAGTTTCGGG
AAGCACTACAAAGGGTCGGTTCTTAACAAGCTTTTTATGTTTCATTTTTTCCTCTTTAAGTTTG
CTTTCTCAGAATTATTATTGGAGTAAAAAGCAATTCTAAGTCATTTCTTTTGATCAAATATTGA
CTTCCTGCGTTCATACTTAGACAGGGTTGTGATGTGTCAATTAAGGAGGTTGATAATCTTCTGA
CACTTCTTGCGGAAAGGAAGAGAAAAATGGAACAGGAAGAAGCTGAGAGGAACATGCAGATACT
TTTGGACTTTTTGCATTGTCTAAGGAAGCAAAAAGTTGATGAACTAAATGAGGTTGGTTTGTCT
GAATTATGGAGTAGCATTGGGCTACCTATTGATAATTATTCTCGTTGCTCTTCATTCCATTTGC
TTCAAAATCTTCACTGGGTTTAGACTGTATAGTTGTTGTAAAAGAAAGCCATAAACCATGTTTC
TATCAATAGATGTATGATCTATCCAACTATTCATGAGACGTATAACCCCTGAATGTTAGATGAG
ATCTCAGAATATTATAGAATTCTGTCATTTATGTCTTCTCTATCTTAATGTAGGTGCAAACTGA
TCTCCAGTATATTAAAGAAGATATAAATGCCGTTGAGAGACATAGAATAGATTTATACCGAGCT
AGGGACAGATATTCTGTAAAGTTGCGGATGCTCGGAGATGATCCAAGCACAAGAAATGCATGGC
CACATGAGAAGAACCAGATTGGTTTCAACTCCAATTCTCTCAGCATAAGAGGAGGAAATTTTGT
AGGCAATTATCAAAACAAAAAGGTAGAGGGGAAGGCACAAGGAAGCTCTCATGGGCTACCAAAG
AAGGATGCGCTGAGTGGGTCAGATTCGCAAAGTTTGAATCAGTCAACTGTCTCAATGGCTAGAA
AGAAACGGATTCATGCTCAGGTTTGTTCCTCCTTGTCTACTCAACATCTTTATGCTGAAATGGT
AAAAGGACAATGGCATTAAAGTTTAAGATATTTGTCTATTAAAGAATAAGAATAATTACTACAA
TTAGGCCCCAGTGATTGTGTTACAGTTACTACCATGCCTAGCTACTCAGCTCTTGGTCATCTGG
ATTGACAGCTCGAGAAATTGAAAGTGGTTGTGGGTAGAGGATGAATCTTCTTACGGAAAAGATA
CCTTAGATTAAGGCCCACATTTTTGGTGGTCTTTATAAAAAGCCGATTGGACTTCAGAGAGATT
GATTTCGTATTGTTTGCACGTAAAAGTAGAAATAGCTTTCTGGACTTTATATCTACTGCTTAGT
GATAGTAGCCGCTTCTTGTCTCTCTGGTACTATAGCAACAAAAAGTCACTATGTTCTCTAGACA
CACTAACAGTTCTGTGAATACTATGCAATCACAATTATAGTAGTTTTCTTGAAAAAACCTGCAT
GGTCCTTTAATCTCTCTGTAACTGCTTGTTGATATATGCACAGATTGCCTAATTCTGTTAAAGT
GTCTTGTCTTGTAGTTCAATGATTTACAAGAATGTTACCTCCAAAAGCGGCGTCAGTTGGCAGA
CCAACCAAATAGTAAACAAGAAAATGATAAGAGTGTAGTACGGAGGGAAGGCTATAGCAACGGC
CTTGCAGATTTTCAATCTGTGTTGACTACCTTCACTCGCTACAGGTAGAGGAGTGACTATCCCT
TTTCAATCGGTCTAGCCGTACATAAAGAGTGTTTTCGAATTAGTTGGGGTTTTAATTGCACTCT
TTATTCACAGTCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAA
CATTGTATCAAGGTGAATTTTCTATTCCTTGTTCGTTGATCAGATAACAGATGATAGGTACCAA
AAGAATGTCTCCGAATATATCAAAATAGACCCTTAAGTGATTAAGTTTTGTTTAATGTATTGAT
AGACGCAATTATTACTATGGGATTCGTTGCTGTGTAATTCTAAGCCAGTGAATAGTATGAAGAT
AAAACTGCTGACATGGTAGGGAGAAGGTTGTGTAGTCAGCAGGCCACTTGAGGAGAATTTTCTA
AAAGATGGAACACTATGTTATCCTTATCCATGTCGGAATATATAGAATCGGTTTGCGATCTTTT
ATATGAAAGTGTCTCTTCTCAATGAAGAGACGAAAGATATATATTTTTAGTTTATGGTCTGGGA
GCTCCGGGGCTCATATCTTTTTCTCTCTATGTGCTTTGGTTTATGGTCTTCCATAGTTTACATG
CTTTATGCTTTGCCTGGACCTCTAGTTTACCTGTAATTTGATGTACCATCTTACTGATTTTGCT
GATGAAGAGGGTGCTGTTCCTTTTCAGCATAGAGTTTGATCGTGATGATGAGCTGTTTGCCACT
GCTGGTGTTTCTAGATGTATAAAGGTTTTTGACTTCTCTTCGGTACGTTCATAAATCTTGGAGT
GCATTCAATTACATACCAATTGAATCTTCTTGTCCAACCTTATGCTTTTGTGAAACTGATCATG
CATCTCAATTCTAAGAAAGCTTCGTTGATAATGAAACTAAGTTATGCTCTTGGGAAATTCTAGC
TTTGATGCAAGATAGCCATTTTACACTTTTGTATTGCGTAGAAGAATATAAATCAAAGCTAATC
AAATTTTTGGTTTTAATTTTCTGTTTTATCCAATGGACCACGCTGAACTGATTGATTATCGGCT
GCTACTTTTCAGGTTGTAAATGAACCAGCAGATATGCAGTGTCCGATTGTGGAGATGTCAACTC
GGTCTAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACATAGCAAGCAGTGATTA
TGAAGGAATAGTAACAGTGTGGGATGTAACTACTAGGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.118377831
Functional Information
Coding potential Y
Potential coding position 13978939-13981573(+)
Potential amino acid sequence MEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLR
MLGDDPSTRNAWPHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDS
QSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSV
LTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADM
QCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQLLKKTSARHVSKTASPLDQF
REALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQ
YIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFNSNSLSIRGGNFVGN
YQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLAD
QPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRD
DELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVT
VWDVTTRQLLKKTSARHVSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAER
NMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPST
RNAWPHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTV
SMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYS
RLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMS
TRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQLLKKTSARHVSKTASPLDQFREALQRGC
DVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINA
VERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEG
KAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQEN
DKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAG
VSRCIKVFDFSSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQ
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017