Detail information of 2_circ_ag.2


General Information
CircRNA Name 2_circ_ag.2
ID in PlantcircBase ath_circ_016049
Alias At_ciR1368, Ath_circ_FC1452
Organism Arabidpsis thaliana
Position chr2: 13664746-13669268  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ag.3 2_circ_ag.4 AT2G32170_circ_g.1 AT2G32170_circ_g.2 AT2G32170_circ_g.3
Support reads 3/4
Tissues leaf/aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCCTTACAAAGTTGACTATATGATATGCAGCACCCCTCCTGCCTGTTTAGTCCCTGGTGCTG
GACTTGGACGTCTGGCCCTTGAAATTTCTTGTCTAGgtttcagaagccaaggcaatgaagtttc
atactacatgatgttatgctcaagttttattcttaattagtaagagtttcttacttttctctta
tacatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCAGAAGCCAAGGCAATGAAGTTTCATACTACATGATGTTATGCTCAAGTTTTATTCTTAA
TTAGTAAGAGTTTCTTACTTTTCTCTTATACATTTTTAACATCAGCCAGCAACAAACTTATAAG
TGTGTTTCTAAGTTGCTTTTGGAGAGTCTCTAAATTTGATTGAGTTAATTTCTTGATTCTGTTC
CAGTTTTGAGTTTTGCTCTACTTTTTTTCTTTTTTCTTTTTCATAAGTACACAATTGCCTGGTG
AGTGGACAATATACCCCTGGATACACACTAACTGCAATTCACTCTCGGATGATGATCAACTACG
CCCTATTTCTATTCCTGATATTCATCCTGCAAGGTATGCCTTATCAGAGAGAGTACTTTGCCTA
TGGTTTGGAAATTTTTGATAGCTTTAAGGATAAAGGGACTAAGCAACTTGTATTGGGGATTTCA
TGGAGCTACTACAATCATTTATTTCAATTTACTAAAAAGTTTAATGTAAACACTCTCTGAGAGC
AGTGCAGGAGTAACAGAAAGTTTCTCAATGTGTCGTGGTGATTTTGTTGAAGTATTCAATGAAT
CAAGTCAAGCAGGTAAGAAATGGTGACTACTTGCTTTTGTTTAAGCCAATATGTGTATGTTTTA
TACCAAATACACCACTCATCACTGAGTTTCAGGAATGTGGGATGCAGTTGTGACTTGCTTTTTC
ATTGACACGGCTCATAACATCATCGAGTACATCGAAACCATATCCAAGATTTTAAAGGATGGAG
GAGTACGTAATTTCCTATACGTACCCTCCTTTCCAACGTCTTTGATATTTCATCACTCGCCTAT
CTAAATTAATGAATTTATCCATCAGGTTTTGATAAATCTAGGACCTCTGTTGTATCACTTTGCA
GACGAGCAGGGCCTTGAAAATGTAAGCATTGGAATTGTCACACAATCTCTCGCTAGATAAATAA
ATTTGATATAACAATAATATATCTTACTTGTTTCTCCTTAGGAAATGTCGATTGAGCTAAGTTT
GGAGGATGTAAAGAGAGTTGCTTCACATTATGGGTTTGAGATGGAGGTAAATCTACACAATATA
ATGACAATGACATTTGCCTGTCAGAAATAAAACATCTCATGATGCATGTTCTTCCTCACTTATA
TGAGTGGTTGTCCTAACAATATTTGCAGAAAGAAAAAACAATAGAAACAACGTACTCTACAAAC
CCCCGGTCTATGATGAAGGTCAGATTTTTTTCCATGTCTTTGGATTTGTGGTTGACTTTTGGAT
CCAGAGATGGGTTTAATTTGTGCATGATGTTGTGTGTGTCTGTTGCAGAACCGATACTATCCTG
TCTTCTGGACAATGAGGAAGAAGTGTGCTATAACAACAACTTAACCAAATATTCCTCAAAACTA
TATATGTTTTATTCTGTTGCATTTGTTTTTAAGGAATTAACGGGTCCAATCTAAAACACATACT
ATTTCTTTTGTTGTTGCAAAATAATGAAACTGTGTTTTTCGGTTGATGTTTGAAAACCAAGTAA
CCAACACTCAAAGCTAAACAAAACCTTTGGCCTGTGGGCACAAAGCTAAAATTTTATTATTTTC
TCGGCACTACTACGCAAATAGGCTAACTAAGGCCCATTAAATAATATGAGGCCCAACTTGAAAA
AGACTCGTTTCTTGTTACTAATAACCTTTCCGATGAAATCAACTCCAAAACCGAAGAGCCACCA
CCATGGTTTCGCCGTCAGAGATGACGGAGACGGCACCGGCAATTATGACAACGGAAAGCGAAAG
GATAGAGAGTTCGAGGGAACTCGTGGATAATGAAGAGGAGGAGAAAATACGCCGTCAGAAGAAG
CTCGAAGAAGCTCTCGAAGCCAAATCTCTTCGCCGCATTATCAGTGCTTACCTCAAGTATCTCA
CTTTTCTCAGTCCTTTTAAACACTCATCCTTCTCTGGATTTTACATCATTTCATAGGCACTGTG
TTTTCTGATTCTAAAGATAATTCTACTGATTGGGAATTTCAAATCACAATTCTAGTTTCTAGAT
TTTACTTTTTATCTTTTTCTTTAGCATTTTGGTATTGGTTCTGCATCGTTGACCTTTGGAAATG
TTTACAGTTACCCAGAGGCTTCGGAAGAGGATTTGAAAAGATGGGAAAGATCATATCGGAAGCT
GTCTCCTGCACACAAGGTTATTTTTTGCCTCATTTCTAGCATTGAGAATAGTAGTAGCATGTTC
TGTAACAGTTAAGAGATTACCAAACGATTTCAAGTCAAGTTGATTTTTTGTCGAATCTTCTTTG
TTTGCTTATATAATAGAACTAATGGTTTCAGTGATGAATTTTTGTCCTTTGTGTAGGCATTGGT
ACCCCATTACCCTATGAAGTTTCAGAGATTAAGAAGGTGAAATCTTTAGTCAGTTAAATATTTC
ACTTATCATCTTGTAGTCTTATTAAATGTCGCGATTCACTTGGATGATATTCAGAATTTTTTAT
TTCCATCATAGTTGCTTCGAGGTTTGCATTTGATTGCCTAAATTTTGTGTTCGGGTGTCATTTT
TATGATATCCATGCTTCTTATAATTCTTCTTTCTCATGCTTGCATACTAAACTCGATAGTATGC
AAGATTGAACTTGACTCATTTCTATCCTGTCTGTACTTGTCCCAGACACCCTGCACATAGTGTT
TGTTGAAGTGTTAGTAAGTTGTTGGATTTTGTTTGTTGCAGGTGTATATCGGCGAATTCATATT
TCATATTTAATATGCTTCAGGTCAGTTGCAGACATTTCTTTTTCTAATTCCCTTGGTGTTTCAT
TTGCTTCAACTTATTTGATTATGTGATTCGTAACTTGACTTGAAATGCTAGAAAATCTACAGTT
CATGTCAATTGTCATGTAAAAATGTAATTCATAATTACTTGGCAGGCTTTTGAGCCTCCTATAG
ACTTGAGTCAGGAACTTGATGGTTGTGAAGACTCAAATCTTGACTGCGCTCCACATGAGAGATA
CACTCTAGATGAAAGGCACGACTCTTCTTGTCAGCCGGCCTTGACCAATAGTTGTACATATAAG
GAAGAAAGCAAACACATTCGTGACCCAATAACAGGAGTGTCTATCGAGGTCAGATCAAGACATT
GGAACTTTATCCTTGTCATTTAAAATCTTTAATTTATTTGTATAAATACAGGAGCTTCAGAGGA
AAGAAGCTCATGATCATTCTCCCAAGGATGACTCTGCAGACACAAGAATCAACGATAAGACATG
TGATTGTCATGAAGGCCAGTTAAATCATGACCATGGCAGTGTAATGCCAACTCATATACTCTTA
TACCTCAGTTCCGCCCAGAAAACGTTTTTGACTATGTTAGCTTTGCGCAGATTCTTTAGTTATT
GTATCAGTTAAGATCTTTGGTGGGATCATATGAGTATTTCCTGGCATTCTAGATCAAATGAATT
TTAACTGTTAGTCTATATTAAGAAAGCATTCAACTGTCAAGCATAGGCTTGTTGTATATATTTT
TGCATTATACTTCATTTATGACTATAAAATTGTCATAATTCATGTGATTTTTCTAATTCTAATG
TTCCTCTTTTCTTTCTTAGGTATCATTTTCATCCCATGATTGGTTGGATTCATCGTTACAGACA
CATGTTCCTCTGGTTGATGTAGATAAGGTATGGTTTTTCAAATTTACTATGGCTGGTGATATTC
ATTTTCCTCAGTCCTAGCCTCCTAGGTAATCATAATTGTATAAGAGCTCTTGTAGCGTGAGACA
AAGATCATTATGTGTCATGTTAGAACTTATTCTCAATCTCTATTAGTTCCATTAGGCAGTTTGG
TAAGTTATGAGGGTTGGTTTGCTCATGTAGCTTTGCATGGGGAGGTAAATCCTGTTGAGCTTAA
GTGCACCTTCTTACACGTATGCATATGCACATGATAGAGGTGACACACACACCAGTACAATTGC
ATATATTTGTTGCGATGTTGTGTGTATTTCTCACCAATCTATACTTTAAAATGTTCATGATTTT
GTTGTATTCTAACACAGGTTCGTTGTATTATAAGGAATATTGTTCGAGACTGGGCAGCAGAGGT
AGCCATATTTTTGTTTGTCATTTTCTTCTGACAATGATGTGTGGAAATCCTTTCTTTAATCTTA
AATCACAACCAAAGTTTTAGTGGTATATTCTTTTTACTTGTAGGGTCAGAGAGAACGAGATCAA
TGCTACAAGCCTATCCTTGAAGAGCTTGATTCCTTGTTTCCTGACCGTTTGAAGGAGAGGTACG
CCGTGTTACTCCTATTTGTTTTTGACTTTTGGGTTTATAGAGACTTAACAAGAGAGAAACAGAA
AATCGGATAATGGTTTTAGCTCCTTCTTAGTACCAGACGACTAGTATTTGATTAGTACCTGCTG
CATTCACTCTCCTTACAAAGTTGACTATATGATATGCAGCACCCCTCCTGCCTGTTTAGTCCCT
GGTGCTGGACTTGGACGTCTGGCCCTTGAAATTTCTTGTCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.319459716
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA