Detail information of Solyc01g068130.2_circ_igg.1


General Information
CircRNA Name Solyc01g068130.2_circ_igg.1
ID in PlantcircBase sly_circ_000166
Alias NA
Organism Solanum lycopersicum
Position chr1: 77233547-77238222  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method Segemehl, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   TT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTTTCTTAGTTAATTATATTATCAACAGTTAACAATCCCACTTACTTGATAGAAGTAAAGTC
TGCTAGAAAGGCCACCGACGTCAAGCTCCCAGGTTCtcagctacaatacaggattaccttacag
ctgcattccgaacaacacttgatgaactgaaaaagggtttggatgagactggaaagactaaggt
cgacaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCAGCTACAATACAGGATTACCTTACAGCTGCATTCCGAACAACACTTGATGAACTGAAAAAGG
GTTTGGATGAGACTGGAAAGACTAAGGTCGACAAAGACGCTGATCCTTACAATCATATGGCTGT
TGATGATTGCAAGCTGATGCTGCAATGGGGTGTGGAGAAGCTCGAAGAATCAGTGAAGTTGATT
GGTGAGACTGATGAAGAGTCGATCCATGAGTATAGTGTTGATCTGTTGAACTGGATAGGAGGAG
TTTACTCGTTCCAAACCATATGTATTGACGCTATTGAAAAGCCAGAATATAAATCAGCAATTGA
AAAAGGATTAGTGAATGCTACACAGCTTACCAATAACGCGATCAGCATGGTAGCAAAGATGTCT
GATGTGTTGAAATCATTCAACATTCAAATCCCGCAAGGTTTACTGGATGGCAACAGCTCTCCTC
ATCGTCGTTTGTTGGATGTAAACAAGGTGGATGGGGGTGGTTACCCAACATGGTTCCCAGCTGC
TGACCGTAAGCTATTGGAGAAGAGCTCAAAGGGAAAAGGAAAAGGAAAAGGAAAGGGAAAAGAC
GGTGCTCCTCTAGGAGCAGGACCAGCACTTCCCCCAGTAGGATCAGGACCATTAACTCCTGATG
CTGTGGTTGCCAAGGATGGAAGCGGAAAATTCAAGAGTGTTGTAGACGCTATCAAGGCTTACCC
AGCAAACCATCAAGGCAGATACATTATCTACATCAAGGCTGGTACTTACGTTGAACAAGTCCTT
ATTGAGAAAAACCAACCAAACGTCTTCATGTATGGTGATGGAGCAGGGAAAACCATCATTTCCT
GTGACAAGAATGTAATGAATAAAGTCACCACCATGAATAGTGCTACAGTCGGTGTGAACAGCGA
GGGATTCATAGCTAAGGGAATTACATTCCGCAACACTGCTGGTCCAGAGGGTCAACAAGCTGTT
GCACTTAGGATCTCTGGAGACAGGGGAGCAGTATTTGACTGCAGCATAGAGGGAAACCAAGACA
CCTTGTACTACCAAACATACCGTCAATTCTACCGCAACTGTGTAATATCTGGTACCGTTGATTT
CATCTTCGGGTGTGGAACAGCTCTCATCCAGAACAGTGAGATCATATTGAGGAGGCCTAGACAA
CAAAGCAAGAACACCATCACAGCTGATGGAAAGGACCAAGCAGACAAAAACACTGGGGTAGTAC
TTCAGAACTGCAAAATTGTACCAGAACAATCACTTTTTGAAGATAGGTTCAAATACGAACACTA
CTTAATGCGCCCATGGAAGGCATATTCCACCAATGTTTACATGGAAAGTGAGATAGGTGACCTC
ATCAGGCCTGAGGGATATCTGCTTTGGGCGTCCGACAAGCCAAATCTTTTCGAACAGACATGTG
AAGTGTATGAATATGCAAACAGAGGACCTGGTGCTAACACTAACGGAAGGAGCAAACTCTTCAA
GAAGTTCAAGGTTCTTAGCCCACAGGAAGCTACTAAATACACCGCTGCAACTTTCCTTCAAGCT
AATGAATGGTTGCCTGGAACCAGTGCACCTTTCTACCCTGGTCTTGGTGGAAAATAGATCATCA
CAAACAAACATCATTTTCCCTACTTCTCAACACCCCTTCCTCTACCTACCAATTCAATCTTCTT
TCATTTTTTGTTGGAGAAGCTAGAGCATCCTTTTTTTAGCAACAAAAAAAAGAAAAAATAAGAC
ATACTTTTGTTCTTTTTGTGTATGTAACCAATTCTTTTTTTGATGATAATAAAGTCAAAATCAA
AATTTCAATGTTACTTATTTCTTCTTCTTACTGCAAACTAAATAACACAGTTGCATAGTTTAGG
TATATGTAACTAACAATTTCACCATATTTGTCTTACCTTATTCCAATGATCTTCCCGCGAGGCC
AATGTGAGCTTAATGATTCACTTAAATTCGGATTAAGTTACAGGTTTTAAGCTCAATCTTCAGG
CCAACAACAATCATTTTCAGGTGGATATGTCATGTAAAAAGGAAAATCAAGTCAATATATATAT
ATATAACTGAAGAAACCTTACTACCTAAACAAGAACTAGGTTCTTGTCAATTTGCCTAGATATA
AACACAGTGATTTTATCGTGGAAACTTTCCTTGCTCAACAAAAGGAAAAACCACGCCAAAACTT
CACTATCTTCAAAGAGCAACTTAGTACCTTCACCTCTACAGTTCACTAAAACTGTTCAACACTT
AAACTATAGTAAAATACTCTACTCTTCAAGAAGTCAAACCCACTTCTTGTTACAAACATAGGAA
CTGTTACAACTCAATAATAAACATAGAACAAATCAACACAGACTAATAATCCTAAACTTTAATT
GATCAGACTTCAATATTCAATAGTTCAGACTCGAACACAACTCATGAACCTGGTCCCAGTGTTG
TTGTAACGAAGCCTTACAGTTTTGCTCCAATGGTTGTGAATATGAAATAGGTGTCGCTATGTCT
TTGCTGGAGAATTCTCTCAATTTGTAATTTGAAAAAGTCCACCTTCTCTTCTTTGACTTTGTCC
TTCTATAGAAATGGATTAAGCCTTGGTAGAATCCTACAAGGAAAAGAAATTAGTTTTTTCCTAG
AAAATAGTCATCTCCCTCATAGGATTTGTTTGTCTATTTTCTTTTCGGCATAGAAGACGTCTGC
CACTTTACGTCTCCTTACTTGACCTGGATTTCTGTTTAAAACATGTTTTCTTAATCCATTTCTG
TATGTGCAAACTTTTCCCGCCTTCTTATTATATGCCTGTGAACTTGGTGCATGTTGTCATCTTA
TTTTTAGAGCTATGTCAAGTCATCAATAACCCAAATATGAAATAGACAAAAACAGATATCTAAC
CTAAAGGGAAGTAAGCGAAAAAACAATAGGCCTAAAAGCAAGCGTGCAGAGTGCTAAGCTAGGA
CTTGCAGACGACTGAGTTCAGGTAACGAGACAACTCGTCAGCATTGGTGCATGACTGACCATTT
GGCTATCCAAGTTATGTAAAAGAACACAATTTACAGTTTTTTCTTGTCATATGAGGGCAAACTG
ATCAGTCCTAAACTCCCTGTCTGAAGCAAATATTGCAAGTACAATAGAACTATCACTTCTTAAA
GTGGAGCACCTTGCTATCATGAAACACCAGCTTTTGCCTTTTCACACAGTATGGCTCTAAGATA
TGTTGTTTTTACTACTTCTGCCGACAAGAGCAGATTTCCTCATGAATAGTAAACGTGTGGAAGC
CTTTCGATGTAACTTGCAATAAGATGTTAGTGCTCATATGAATGAAGGATTTATGTATAGTAGC
AGTAAGATCAGAAAGATTGAACCTGTGACTATTTGAAGTTCCATTAGCACTTACTACTGTCTTC
CACCCTCTTCATCAATCAGTTCCCATGGAATACTTTCAACCTACGACAAACATCTAAAAAATGT
TAAGCACATAGATTTCTCTGTACCATAATGGGTTTGTGATATGGTATATATAGCATGGCCTCGA
GTCCTTAAATTATTAAACAGTGCAATAATACCACTTCCATAGAGCGATAAGTCGATAAACTATA
GCAGTTGAATCAAATTGGCCAACTGCAAGAGGGGATGATTGCTTCATGGCCAAAGAAAAAACAT
CATCTACTACATGGTTTGGATTTGTTTCTTTTCCGATGCTTATAGAAACAGTATGCTCTTTTTA
ACAATAGACATCACAAGAAGTACATAGATTTTACACTTCATGTTCATCCATGAAGTACAGAAGT
ATCCGGTTCATTTCCAAAGTCATTGTGCTATAATTTTAGAAGCCAATGCTATCAAGGTTACATC
CAGAAAATCCATGAAAATAAAGCAAAAACAAAAACAATTTGTTTTGCACATCTAGTATAGAAAG
ATGAAGCTTTGCACATCAAGAATGACAAATCTTTGTTACAATATTACAGTTGCTTGGTGTAACA
TAATTTGGCTACAGGTACAATATTACAGTTACTTGGTGTAACATAATTTGGCTACAGTTACAAT
GTTGAATGGAATGGCAACATAATTTCGGTTTTACGAGGTAAGTAGAACATCAAAATCACTCAGA
GTCCATTCTGCCACTTCATCTTTGTCGCTAACAAAAATTTCTGTTCCCACATCCAGAGATGTCC
ATATTCTTCTAGCAGGATGTGTACCTGGATCCTGCAGCCAAAAACAGCAAGGATGGAATCATGC
AGGTTGGTTGGGCCACTTGTTATTCAATCTTTAGTGTTTGTTTGCGCATTTACGTCTGATTCAA
ACATGGTTTTGGCACACATCTAATAAAGTTAATGTTGAAGTGTGTGACCGTCTTATCTAAAAGC
TTAATTTTTTATAAAGAACACACTACCATTAGTTAATTATATTCTCAACACGCCCCCTCACATG
CAGGCCTGATTGTTTTTCATGAGCTTAAGCACGTGGAGATTTTTTTTGATATGGATAGCGTTGA
GGTTCGATTCCAGGACCTAGAACCTCTGTCTGCTCTGATACCATGTTGAAGTGTGTGACCATCT
CATCTAAAAGCTTAAGTTGTTACAAAGAAGACACTTTTCTTAGTTAATTATATTATCAACAGTT
AACAATCCCACTTACTTGATAGAAGTAAAGTCTGCTAGAAAGGCCACCGACGTCAAGCTCCCAG
GTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.120763505
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017