Plant Circular RNA Database

Detail information of AT4G15110_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT4G15110_circ_g.8
					
						ID in PlantcircBase
						ath_circ_031019
					
						Alias
						4:8631497-8632343
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 8631497-8632343  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT4G15110						
					
						Parent gene annotation
						
							CYP97B3
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT4G15110_circ_g.2 AT4G15110_circ_g.3 AT4G15110_circ_g.4 AT4G15110_circ_g.5 AT4G15110_circ_g.6 AT4G15110_circ_g.7 AT4G15110_circ_g.9 AT4G15110_circ_g.10 AT4G15110_circ_g.11 AT4G15110_circ_g.12 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G15110.1:4

General Information
CircRNA Name	AT4G15110_circ_g.8
ID in PlantcircBase	ath_circ_031019
Alias	4:8631497-8632343
Organism	Arabidpsis thaliana
Position	chr4: 8631497-8632343 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT4G15110
Parent gene annotation	CYP97B3
Parent gene strand	-
Alternative splicing	AT4G15110_circ_g.2 AT4G15110_circ_g.3 AT4G15110_circ_g.4 AT4G15110_circ_g.5 AT4G15110_circ_g.6 AT4G15110_circ_g.7 AT4G15110_circ_g.9 AT4G15110_circ_g.10 AT4G15110_circ_g.11 AT4G15110_circ_g.12
Support reads	2
Tissues	seedling
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G15110.1:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGAAAAAGCATTTTCCCGGAGGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGC
TTTTGGACCAAACGCAAGTTTATAAATTCCTCCATGctgtcttgtctctttagcattttgaatg
aggccatcaaggcaatcgtttataatcttcagatcgctttggaactttcgttgcctcggaacta
tccatcta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 609
Transcript exons: 8631497-8631670,8631752-8631993,8632085-8632169,8632236-
8632343
CTGTCTTGTCTCTTTAGCATTTTGAATGAGGCCATCAAGGCAATCGTTTATAATCTTCAGATCG
CTTTGGAACTTTCGTTGCCTCGGAACTATCCATCTAGCTGGAGGAAAGTTCCAATAAGGGAAGT
AGAAAGTAGACCGATGCTCTGCCTCGAAAAGAGTTCCATAAACTGCCTTGATCACAGGGGACTC
TTTTGTGACAGAGCCAAAATCGTAGTTGAACACGCTAAGACCTATAATATCAAGAGCCAGACTC
GAGAATTCTGCTTCCAGATCCAACTCAATGGTGTCCTCCCCGCTTGAAGTTTCTTTCTCCCTTA
TGAGTTTCTCAGATTTCAATATCATTTTCTCCGAACAGTCACTAAATACTTTGACCATGGCCTC
TAGATACAATTTATGGAATGCGGGAGTGATAGCTCTTCTTCTTAACTTCCACGTATCTAGATCA
GCCGGTATTAACCCTTTTCCCATAATCGGCTCTAAGATCTCAGCAAGAACTCCCTTGTCATAAG
AAAAAGCATTTTCCCGGAGGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGCTTT
TGGACCAAACGCAAGTTTATAAATTCCTCCATG
						
					

						Genomic sequence
						
							CTGTCTTGTCTCTTTAGCATTTTGAATGAGGCCATCAAGGCAATCGTTTATAATCTTCAGATCG
CTTTGGAACTTTCGTTGCCTCGGAACTATCCATCTAGCTGGAGGAAAGTTCCAATAAGGGAAGT
AGAAAGTAGACCGATGCTCTGCCTCGAAAAGAGTTCCATAAACTGCCTGTGATGTAACAGAAAA
TATCAATGGACCAGTGTACCTCAGACGACTGGTGGAGAGCCAGTTCAATAGTAGAATGATTACC
TTGATCACAGGGGACTCTTTTGTGACAGAGCCAAAATCGTAGTTGAACACGCTAAGACCTATAA
TATCAAGAGCCAGACTCGAGAATTCTGCTTCCAGATCCAACTCAATGGTGTCCTCCCCGCTTGA
AGTTTCTTTCTCCCTTATGAGTTTCTCAGATTTCAATATCATTTTCTCCGAACAGTCACTAAAT
ACTTTGACCATGGCCTCTAGATACAATTTATGGAATGCGGGAGTGATAGCTACAACAGAGATTA
AAAAGAAACAATCATCAATGGCCACGGTACTGCAATATCTGAATTCTGAAAGATAGAGATTACA
ACGTGCTTTTACCTCTTCTTCTTAACTTCCACGTATCTAGATCAGCCGGTATTAACCCTTTTCC
CATAATCGGCTCTAAGATCTCAGCAAGAACTCCCTAGAGAAACACAGGAAGTTACTTGATGATA
CCAACGAAAACAAAAGAAAGGGTTATTTCAGTTACCTTGTCATAAGAAAAAGCATTTTCCCGGA
GGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGCTTTTGGACCAAACGCAAGTTT
ATAAATTCCTCCATG
						
					

			
		

Sequences
Splice junction sequence	AAGAAAAAGCATTTTCCCGGAGGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGC TTTTGGACCAAACGCAAGTTTATAAATTCCTCCATGctgtcttgtctctttagcattttgaatg aggccatcaaggcaatcgtttataatcttcagatcgctttggaactttcgttgcctcggaacta tccatcta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 609 Transcript exons: 8631497-8631670,8631752-8631993,8632085-8632169,8632236- 8632343 CTGTCTTGTCTCTTTAGCATTTTGAATGAGGCCATCAAGGCAATCGTTTATAATCTTCAGATCG CTTTGGAACTTTCGTTGCCTCGGAACTATCCATCTAGCTGGAGGAAAGTTCCAATAAGGGAAGT AGAAAGTAGACCGATGCTCTGCCTCGAAAAGAGTTCCATAAACTGCCTTGATCACAGGGGACTC TTTTGTGACAGAGCCAAAATCGTAGTTGAACACGCTAAGACCTATAATATCAAGAGCCAGACTC GAGAATTCTGCTTCCAGATCCAACTCAATGGTGTCCTCCCCGCTTGAAGTTTCTTTCTCCCTTA TGAGTTTCTCAGATTTCAATATCATTTTCTCCGAACAGTCACTAAATACTTTGACCATGGCCTC TAGATACAATTTATGGAATGCGGGAGTGATAGCTCTTCTTCTTAACTTCCACGTATCTAGATCA GCCGGTATTAACCCTTTTCCCATAATCGGCTCTAAGATCTCAGCAAGAACTCCCTTGTCATAAG AAAAAGCATTTTCCCGGAGGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGCTTT TGGACCAAACGCAAGTTTATAAATTCCTCCATG
Genomic sequence	CTGTCTTGTCTCTTTAGCATTTTGAATGAGGCCATCAAGGCAATCGTTTATAATCTTCAGATCG CTTTGGAACTTTCGTTGCCTCGGAACTATCCATCTAGCTGGAGGAAAGTTCCAATAAGGGAAGT AGAAAGTAGACCGATGCTCTGCCTCGAAAAGAGTTCCATAAACTGCCTGTGATGTAACAGAAAA TATCAATGGACCAGTGTACCTCAGACGACTGGTGGAGAGCCAGTTCAATAGTAGAATGATTACC TTGATCACAGGGGACTCTTTTGTGACAGAGCCAAAATCGTAGTTGAACACGCTAAGACCTATAA TATCAAGAGCCAGACTCGAGAATTCTGCTTCCAGATCCAACTCAATGGTGTCCTCCCCGCTTGA AGTTTCTTTCTCCCTTATGAGTTTCTCAGATTTCAATATCATTTTCTCCGAACAGTCACTAAAT ACTTTGACCATGGCCTCTAGATACAATTTATGGAATGCGGGAGTGATAGCTACAACAGAGATTA AAAAGAAACAATCATCAATGGCCACGGTACTGCAATATCTGAATTCTGAAAGATAGAGATTACA ACGTGCTTTTACCTCTTCTTCTTAACTTCCACGTATCTAGATCAGCCGGTATTAACCCTTTTCC CATAATCGGCTCTAAGATCTCAGCAAGAACTCCCTAGAGAAACACAGGAAGTTACTTGATGATA CCAACGAAAACAAAAGAAAGGGTTATTTCAGTTACCTTGTCATAAGAAAAAGCATTTTCCCGGA GGACATGCCTTGCAATAATGGGATCTGAGATGACAACAAAGGCTTTTGGACCAAACGCAAGTTT ATAAATTCCTCCATG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.228283098

Conservation Information
Conserved circRNAs	NA
PMCS	0.228283098

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT4G15110_circ_g.8

Address

Any questions?

Supported by