Detail information of BGIOSGA035204_circ_g.1


General Information
CircRNA Name BGIOSGA035204_circ_g.1
ID in PlantcircBase osi_circ_008984
Alias Chr11:15263171_15264139(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 11376404-11377371  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA035204
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA035204-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGACATCTATTTGACTGTAGGAATTAGTCGAGGGTTTTGACCAGGAAACTGCAGCTGTTGTG
TTGGCCAGATACATCTCGTTGAAAATGGAAATGGAGgtggcacgcttgaaataaactgttcgaa
ggacattaaggttcaaggtattattggaccatgcacatctttggaaaaggtaggggtatctgtt
ccatctag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCACGCTTGAAATAAACTGTTCGAAGGACATTAAGGTTCAAGGTATTATTGGACCATGCAC
ATCTTTGGAAAAGGTAGGGGTATCTGTTCCATCTAGTCAATGCTCTAAGATATTTCAAATTGGA
AAGGCCTATTTTGAGACTTGGTTTAATACATCATGGCATTTGTAGAAAGGAGCTCTGTGTGCCG
ACACAGTTGTTGGTCAAGGAAATACAACAGCATGGAAAATGTGTGGTCTTGACAGGAATACTTC
ATTAACAGTATTTTTTGATGTCTCACCGAGTGAGCGGTCAAGCCAACCAGGACATCAGAATCCC
GATCTGTATATACAATTTGTAACAAGGTACCTTTCATTTTTATTCTGTTGCCTCCAGTGCAAGA
ATGGCTTGATGTTATAATTGTGCTTTTGTTTTCTCTGTAGTTACCAACACCCAGAAGGTCAAAT
GAGGATTAGAGTTACTACCATATGCAGAAAATGGGTGGATGGATCTACCAACACAGAGGTTGGC
CTTGAAAATCTGTTCTTTAGTTCCTATACTATGTTGTTGAATACTTCTAAATTATATCTCAACA
ATCCTAATTGTATAATTTCTCATGTCTGTGCGTAACAACCCATGTATTTTATAGCCGCAAGGAC
AATTACACTCTGCTGGCTAGACAATGAACAGCATATCTGAAAATTTTGGTTAAATGTTAACAAT
GCTTTGGAAAATATTTTTAAGCTTTTACACTGTTTGTCGTATAGCTGCAAAAAAAGGTGTTTCT
TGGCTTGAACAATCTGGATTCCAAAACATGCTGTGTCGTACTGTTTAATTTATTTCATGATAGG
GCAAATAAGGGCAAATATGTTGCGGTTTTGACTTTAATTGACATCTATTTGACTGTAGGAATTA
GTCGAGGGTTTTGACCAGGAAACTGCAGCTGTTGTGTTGGCCAGATACATCTCGTTGAAAATGG
AAATGGAG
Conservation Information
Conserved circRNAs zma_circ_001102
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021