Detail information of BGIOSGA025944_circ_g.3


General Information
CircRNA Name BGIOSGA025944_circ_g.3
ID in PlantcircBase osi_circ_017205
Alias Chr07:22828822_22828984(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 20528032-20528194  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA025944
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA025944_circ_g.1 BGIOSGA025944_circ_g.2 BGIOSGA025944_circ_g.4 BGIOSGA025944_circ_g.5 BGIOSGA025944_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA025944-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTACCGCATCAACGGCCTCCCCGGCGTCGGCGACGGCAACGACCTCTACCCCGGCGGCCAGT
ACTTCGACCCGCTCGGCcctcggcaaccccaacctggtgcacgcccagagcatcctcgccgtgc
tgggattccaggtcgtcctcatgggcctcgtcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGGCAACCCCAACCTGGTGCACGCCCAGAGCATCCTCGCCGTGCTGGGATTCCAGGTCGTC
CTCATGGGCCTCGTCGAGGGCTACCGCATCAACGGCCTCCCCGGCGTCGGCGACGGCAACGACC
TCTACCCCGGCGGCCAGTACTTCGACCCGCTCGGC
Conservation Information
Conserved circRNAs zma_circ_000397
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021