Detail information of Zm00001d024703_circ_g.1


General Information
CircRNA Name Zm00001d024703_circ_g.1
ID in PlantcircBase zma_circ_006236
Alias stemdr_test_circ_003688
Organism Zea mays
Position chr10: 84138038-84138179  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d024703
Parent gene annotation Zinc finger CCCH domain-containing protein 38
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered Zm00001d024703_T010:1
Zm00001d024703_T004:1
Zm00001d024703_T008:1
Zm00001d024703_T003:1
Zm00001d024703_T005:1
Zm00001d024703_T002:1
Zm00001d024703_T007:1
Zm00001d024703_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATCCACGGTCAGCAATATATGGACTTCTGCTCCTGCCTCTGCCTCGCCCTATACTCCTGCT
TCTGCTCcctaccagccacaaaatccctacagggccgaacaggtcctccagatgttctgcctct
ctcaaccctccact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTACCAGCCACAAAATCCCTACAGGGCCGAACAGGTCCTCCAGATGTTCTGCCTCTCTCAACC
CTCCACTCAGATCCACGGTCAGCAATATATGGACTTCTGCTCCTGCCTCTGCCTCGCCCTATAC
TCCTGCTTCTGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.463048944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018