Plant Circular RNA Database

Detail information of 5_circ_ag.3

			
						 General Information
					
						CircRNA Name
						5_circ_ag.3
					
						ID in PlantcircBase
						ath_circ_036876
					
						Alias
						5:2351207-2353808
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 2351207-2353808  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_ag.2 						
					
						Support reads
						33
					
						Tissues
						flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.3
ID in PlantcircBase	ath_circ_036876
Alias	5:2351207-2353808
Organism	Arabidpsis thaliana
Position	chr5: 2351207-2353808 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_ag.2
Support reads	33
Tissues	flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATC
TGGCTGGAGGGAGAACCTCAACCGCGGATATGACAAgacggtgttctatggagaatacatgtgc
acgggaccaggatcacacaaagcgaagagagtggcacacacacaagacattgacaacaaagaag
ctagccaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GACGGTGTTCTATGGAGAATACATGTGCACGGGACCAGGATCACACAAAGCGAAGAGAGTGGCA
CACACACAAGACATTGACAACAAAGAAGCTAGCCAATTCCTTACCCTCGGCTACATCAAGGGCT
CCAAATGGCTTCTACCTCCTCCCGCTTACTAAACAGACCCAATCATCACTAAAATTCTGTATAT
GTTACAATTGTACGTTTTGTTTTCGAAGTATCCTCTCTTCCTGTATATAATGGAGGAGTAGAGA
CTTGTGTAATTTTGGTTTCATGATAATAAAATACTCAATGGTTCACAAATGAGAAGCGGATAAG
AATTCAAACATACTGATTATTGTGCATGGATAGAGTGACGCGACTGATTAATGTTATGAATGAC
AGTATATTTGTATGCGAAATTGCGAACACATTAACTATAAATATTTTCTAGTTAATGTTAAAAT
GATTGGGGACAATTTCTAAACAAAAAATAATATGGACATTACTTTCTATCATTTTTTATGTTTG
ATATTAGAACTCGTATTTTGGTAGAAAATTGTTAACTTGTGATTTAAAAAAAAAAACTGAAGAA
TCACATTTTTAGCAGATGGTTGTGAAATTACGTTTTTGGTTAAAAATTGTAGATTCACAATTTT
GTAAAGGAAAATCACGGATAGCTTTTTATTGGTGGAACATTTTGTAATCTTTTTCTATTATTAT
AAAAACTTGATAATTGACATTACCGGTCTAGTAGAAATAAAACACAAAATTTGAAGAGATATAT
ATAAGTTCGATCGAAAATCACGGCCAAATGTGGGAAGCGTCATTGACGTAAAGCAAATCCAAAT
TTAGGAAGTGTCATTTTAATTAACATTGAACTACTAACCACTCCTGTCATGTCTAGCAAATTTA
CATTCAAACATAAATTGTGGTTTAGGTCCTTTTCAGGTAAATCTATAGATAGATATATAGCAAA
TTAACAACATAGTTCCTTTTGGATGAGTCAATATTCAACATGTTGATTTTGCCAACTGTAAATT
TTCCTTTTCGTTGATGGTTACAGATGAATGTGCGAATTTATCTCCATTCAAAATTACTGAATTT
GTAATAATAACAAAATCAGATATTCAAAAATGCTTCAAGAAATATAAACCACAGACGAGAATAG
TAAAAATGAGATATGTCCGGTCAGAGATCAACAAGCAAGACAAGTATAAAAACCCCTTCAAGGC
TTCTTCATTTCTTCCATTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAGTTTTTCTTTT
CCTTTTCATTATTTTCTTTTATTTTGTAACAGAAATAAAAGAAAATAAAAGAAAATAAAAAGAT
GGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCC
ACCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACGTTA
AACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAGCGCGACA
AATTATCACCGTAAGTTACTAAAATCTGATTTTTGGTTTGGTTCGGTTCATATCGATTTGACCG
AATTAAGTAGGCGTTGTTAAATTTTTGCTTATATGAATAGTTTACAAATGTATGTTAACTCGAG
TGAAAAATGAAAATCTCATTGCAGGTGAATCAAAAAGGTGGCGCTAATTTCAAGACATTAAACG
AAGCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGTGT
ATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAACCTGGT
GCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAGAGTGCAACTC
TTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAGTATGAGAAGCATATCT
ATATTCGTTATACGTTACTACATTACGTTAGAGATTAATCGCTACTAATTAATTTGATTTTGTT
ATACTATAGAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGA
TCAACGCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGA
CGACAAGGGCAACCATTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGGA
AGAGGAGCTTCCTTGTACTTGGTAACCTTAAAATTAAATATTAGACATCTTTTAACATGGTACA
CATATATATAGCATTTTTTTGATATTAATAGTACATATATTTGTATGTAAACTCGATAGAATAC
GCAATTGCACGCTGTTGGAGATGGATTAAGAGTGATCACAGCTCAAGGTAGACAAAGTGCAACC
GAACAAAACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGG
GCAGGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAA
TCCATCTGGCTGGAGGGAGAACCTCAACCGCGGATATGACAA
						
					

			
		

Sequences
Splice junction sequence	CTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATC TGGCTGGAGGGAGAACCTCAACCGCGGATATGACAAgacggtgttctatggagaatacatgtgc acgggaccaggatcacacaaagcgaagagagtggcacacacacaagacattgacaacaaagaag ctagccaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GACGGTGTTCTATGGAGAATACATGTGCACGGGACCAGGATCACACAAAGCGAAGAGAGTGGCA CACACACAAGACATTGACAACAAAGAAGCTAGCCAATTCCTTACCCTCGGCTACATCAAGGGCT CCAAATGGCTTCTACCTCCTCCCGCTTACTAAACAGACCCAATCATCACTAAAATTCTGTATAT GTTACAATTGTACGTTTTGTTTTCGAAGTATCCTCTCTTCCTGTATATAATGGAGGAGTAGAGA CTTGTGTAATTTTGGTTTCATGATAATAAAATACTCAATGGTTCACAAATGAGAAGCGGATAAG AATTCAAACATACTGATTATTGTGCATGGATAGAGTGACGCGACTGATTAATGTTATGAATGAC AGTATATTTGTATGCGAAATTGCGAACACATTAACTATAAATATTTTCTAGTTAATGTTAAAAT GATTGGGGACAATTTCTAAACAAAAAATAATATGGACATTACTTTCTATCATTTTTTATGTTTG ATATTAGAACTCGTATTTTGGTAGAAAATTGTTAACTTGTGATTTAAAAAAAAAAACTGAAGAA TCACATTTTTAGCAGATGGTTGTGAAATTACGTTTTTGGTTAAAAATTGTAGATTCACAATTTT GTAAAGGAAAATCACGGATAGCTTTTTATTGGTGGAACATTTTGTAATCTTTTTCTATTATTAT AAAAACTTGATAATTGACATTACCGGTCTAGTAGAAATAAAACACAAAATTTGAAGAGATATAT ATAAGTTCGATCGAAAATCACGGCCAAATGTGGGAAGCGTCATTGACGTAAAGCAAATCCAAAT TTAGGAAGTGTCATTTTAATTAACATTGAACTACTAACCACTCCTGTCATGTCTAGCAAATTTA CATTCAAACATAAATTGTGGTTTAGGTCCTTTTCAGGTAAATCTATAGATAGATATATAGCAAA TTAACAACATAGTTCCTTTTGGATGAGTCAATATTCAACATGTTGATTTTGCCAACTGTAAATT TTCCTTTTCGTTGATGGTTACAGATGAATGTGCGAATTTATCTCCATTCAAAATTACTGAATTT GTAATAATAACAAAATCAGATATTCAAAAATGCTTCAAGAAATATAAACCACAGACGAGAATAG TAAAAATGAGATATGTCCGGTCAGAGATCAACAAGCAAGACAAGTATAAAAACCCCTTCAAGGC TTCTTCATTTCTTCCATTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAGTTTTTCTTTT CCTTTTCATTATTTTCTTTTATTTTGTAACAGAAATAAAAGAAAATAAAAGAAAATAAAAAGAT GGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCC ACCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACGTTA AACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAGCGCGACA AATTATCACCGTAAGTTACTAAAATCTGATTTTTGGTTTGGTTCGGTTCATATCGATTTGACCG AATTAAGTAGGCGTTGTTAAATTTTTGCTTATATGAATAGTTTACAAATGTATGTTAACTCGAG TGAAAAATGAAAATCTCATTGCAGGTGAATCAAAAAGGTGGCGCTAATTTCAAGACATTAAACG AAGCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGTGT ATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAACCTGGT GCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAGAGTGCAACTC TTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAGTATGAGAAGCATATCT ATATTCGTTATACGTTACTACATTACGTTAGAGATTAATCGCTACTAATTAATTTGATTTTGTT ATACTATAGAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGA TCAACGCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGA CGACAAGGGCAACCATTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGGA AGAGGAGCTTCCTTGTACTTGGTAACCTTAAAATTAAATATTAGACATCTTTTAACATGGTACA CATATATATAGCATTTTTTTGATATTAATAGTACATATATTTGTATGTAAACTCGATAGAATAC GCAATTGCACGCTGTTGGAGATGGATTAAGAGTGATCACAGCTCAAGGTAGACAAAGTGCAACC GAACAAAACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGG GCAGGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAA TCCATCTGGCTGGAGGGAGAACCTCAACCGCGGATATGACAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.327410339

Conservation Information
Conserved circRNAs	NA
PMCS	0.327410339

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.3

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