Detail information of BGIOSGA034817_circ_ag.2


General Information
CircRNA Name BGIOSGA034817_circ_ag.2
ID in PlantcircBase osi_circ_009239
Alias Chr11:2638363_2642753(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 2295660-2300050  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA034817_circ_ag.1 BGIOSGA034817_circ_ag.3 BGIOSGA034817_circ_ag.4 BGIOSGA034818_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGA
GATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGgatgcgtcaagaagatgctgtagaatta
cagaagaagatcatgagtgcaaaattcgacttcaatgacttcctaaagcaatcacagaatgttg
caaaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGCGTCAAGAAGATGCTGTAGAATTACAGAAGAAGATCATGAGTGCAAAATTCGACTTCAAT
GACTTCCTAAAGCAATCACAGAATGTTGCAAAAATGGGTTCCATGAGCCGTGTAGTTGGAATGA
TTCCAGGCATGAACAAGGTACATGAATCTGAGGAATTCATTTATTCTTTCAAGTCTGACAATAT
CCCACTTCATTATGTTTACATTTCAAATGAAAAATGGCAGAACTTGATATCAGTTCTGATTCTA
AATAGGTTACTCCTGCACAAATTCGAGAAGCCGAGAAAAGACTTGCATTTGTGGAGTCTATGAT
CAATGCAATGACTGCCGGTATGTTACTCGTGATTCTAGGACTGTTGCTAATTGTTATACAACCA
AATGAAGCTTACTACGTTGTTTCCATGGGTAATAGACCTAGACACCTAATTGCATGTATTCTGG
CATGAGCAGAGGAAAGGGAAAAGCCAGAATTACTGGCTGAATCACGTGACAGGAGGATAAGAGT
GGCTGAAGAGTCCGGAAAGAGTGAACACGAGGTTCAGTTGTAATTTCTGTCTTCTCTTTGTTAA
AAAACAATCACAATATTTTTTGCTCATTCCAGTTACCATGGAGCTGACGCGTGCACACGCACAC
ACACATTGCCGTTTTTCACTATCAGGTGAGCCAGTTGGTTGCCCAGCTTTTCCAAATGCGTGCT
CAGATGCAGAAGCTGATGGGTGTGATGACCGGACAAGAAGCACTTCCAGGCATGGGGAATCTCA
TGGAATCTCTTAACGCCGATGAGAAGGTGATAATCTAACAATGCCTCGGGTGGTGTGGGTGATT
TGGTTCACTACAGTTTGGCTGGGTTACTTACGGTTGCCTGTATTTGTTGTGCATCATGATCATT
CAGGCACCTCCTGGCACTGCACGACGGAAGAGGAGGCACAGCAAGACGAGGCAGAGGGAGCTGG
ATGCAGTCCCTAGTTCTTGAGCTGGTGAGCGTTGTAGTTCAGAGTTACTGCTCTTTTGCTTCAG
AGACCCGGATCTGAGAAAAAAGAGATGAAAAAAAAATGTTGTCTTGCTACCTTTTTTAGTTTGT
ACGTAGGAGATCTGCAGGAAGTTCATAGGAAGCAGTAATTTCCTACCAAATTGTAATGTTACTT
AGCCAGTCCTACTCAGCAATGCAATCGGTTCACTCGAATGCTCGGACTTTTTACATTACATTAA
TCATGAATGTATATGTTGTAGAAGGATCAGGTTCATTTCAAAACTTCACCATCCATGTCCATTC
GAACTCAAGAATTTTCTGATTCATGCGGAAAATCGAAAATGTACTGACTGTGTTGGGATTACCA
TACCCAGAAAAACAAAAGCAAAGTCCTAAATTTTTTTAAAAAAAAGTTGAAGGGGAAAACATTG
AAGTGTAAATAGGCCCATATGTGGGCCCAACATCGGCAAGCCCGAAAGCCCAATAGGGCCCATA
TTCAACAATCGCCTCTCTCTTATCCTCCCCGTTGGTTCCCTCCCCTCCGCAGAACGCCACCAAA
AATGGAGGCCACCAGTAGTACTACACTAGCGCTCTCCTCGCCGCCCACCGCCGCCGCCCGCCGC
TCGCCGGCGAAGGCGATCGTCACCTCCCACCACCTGCGCCACTCCTCCGTCCCCGCCCTTCACC
TCCGCGCGGTCCCCGGCCCCTCCTTCCGCGCCCTCCCCTCACCTGGCTTCCCGGTCCCTCCCAA
CTGCTAGTTTCTTGGCTTCTTCAATTCTTCCGCCCCGGATAAATTTCGCTTTTGCTGATTTGTC
TTGGATGCGTTCAGGGATGGAGGAGGAAGAGGGGAAGCGGGCTGGTTGTGCGGGCAGAGATGTT
TGGGCAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGGTGAGTTTCTT
TTTGTTTTTGACGCAATTTTTCTTCATGTAAGTTGTAAATTTGTTGTCAATGAGATGAATGAAT
CAAGGAGATGTCTTTATTGGTTCAAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGG
GATATCAGAAGAGCACTTTTGGAGGCAGATGTATGTGGTGTCATTCTTTACATGGTTTTGTTAC
ATTTTCTCGATCTAATTCACTACCTACTTTGCAGGTGAGTTTGCCGGTAGTGAGAAGTTTTATT
GAGTCCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGC
TGGTGAAGGTATACTAAACAATGACATTATGGCTCTGGATAGTTTTAGGCTTAATTTTCTTCAT
TTAAGTCTGTGTTAATCTACTAGATATTAGTGCATGTTGTGGTATAAGTTCAGCATGCATTGTT
TTCACTTCAGAGAAACAAGAGTCAGATATATTACTGTGTAATTCTAGCACCGGTTGGACTAACG
TAAAAAAAACGATGCAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGA
TTTGGTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAA
ACTACTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGTGCCTTCCTTAGTCCTCTACT
TTAAGCATACTCTAAGATTCCTAGACTATTGAATGCTTATAGACCAGTCTCAGGTTACAGGGGA
AGAGTTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCT
GGGGAAACAGGTATTCTGAAGACAACACTCTTTCCAGGGTAGTATTGTCTTGGAAACCTTTTCT
AGCTACTAATTTTAACTCTCTAACACAAAAATTCAAATTTGCCGCACTCTGCATATTTTACCTG
TTTGAAGTTAAAATGACAGCTTCTTTTAAGTGTATTGCTGTGATGCGCTTTTTAATGAAATACA
TTTCAACTTTCATAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAA
TTGCCAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGC
TGGAAGGCTGCAGGTCATTCTTATTTTTTCTTTAATTTTTTCCTCTTGTTTCAGCTATGATTCT
AAAAGAACATGGATCTGTTTTTGCTAGTTTTTACCAGTTGACATCTCACATAAAAATATCTATA
ATGTCAGATCTTGATCATCTTGAACTTTAAAATATTAGTTATGCCTTATGTTCATGTATGTGAT
TAAATTGCAATAGTTTACACTTTACACTTCTATGTAGTTACAAATTTTTGTTTTATCTTTGTTT
CAAACTTAACATAGTACTTCCACTTGTAAAAGATCATCTGATTAGTCCTTCTATGGTTAGGTAG
ATAAAGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACT
TGTGGTGGATGCCATGACTGGACAAGAAGCTGCATGTACGTAGCTACCACTCATTGTTCTTCCA
GGGGTATAGGGATCTAGTAAATACTGTTCCCAAATTATTTTTGCCTCACGTACAAGTTTTTGTT
CCAAGTATCAATATCATGTTCATTTTATTGCTTGCTCCTCATGATAATCAAATATTGAACTCGT
TATCATCTGCTATAGTTGCCCTACGACTTACCCGCATTTCTTTTCTGATATGGCCAGCATTGGT
TAGCACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCC
AGAGGTGGAGCAGCACTAAGTATCAAAGAGGTCTGTTGAATGTGAAAAACAAATGTCCATCATT
TTGTTTTTCCATCTAATTATTAGTTCAGAGTTCTTTATTTTCTCGAACAAGTTCAGAGTTCTTT
GTGAAATAATAAAAACCAATTCTGTCCTGAACAATGTATTAATTCTGCTAAGAAGGCGCAACAA
TTACTGTTTCCGGTTCATTTTGTTGGATTCCACTTCCTAGATTCCTCGCTTACTGAAAAAAAAG
TTTGGTTGTGTGAGTTCAACTGGTCCTGACAAATTTGTTGTCTAATAAAAAATGTCCATAATAG
GGTTATATGTTATTTGACTTTGTATCTGTGACTCTTCCAATTGTATCTTTACATGTTATTCTGG
TACTTTTGTCACACCTACATTTCTCAGCAATTTTACTTTGTGTTCCCTTGGCTGGTAGCATATA
ATAAATATGAAGAAATGATGAATCTGTAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGG
AGAACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATG
GGAGATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021