Detail information of AT2G42590_circ_g.3


General Information
CircRNA Name AT2G42590_circ_g.3
ID in PlantcircBase ath_circ_017968
Alias Ath_circ_FC1643
Organism Arabidpsis thaliana
Position chr2: 17732555-17733475  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G42590
Parent gene annotation General regulatory factor 9
Parent gene strand -
Alternative splicing AT2G42590_circ_g.4 AT2G42590_circ_g.5 AT2G42590_circ_g.6
Support reads 59
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G42590.3:4
AT2G42590.2:4
AT2G42590.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCAATCACGTTCTTGTAACCCACAGAGAGTAAGTTCCTCTCTTCCACCGTCAGATCAACAT
TCAATTTCGCAACACTTTTCATTGATTCCACCATTTctccttcttctgagatgtcagaagtcca
caaggtcagattgtccctaaggagttgcattattaaggtgctatctttgtaggattcctcgttc
agagtgtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 654
Transcript exons: 17732555-17732703,17732797-17732906,17733004-17733091,17
733169-17733475
CTCCTTCTTCTGAGATGTCAGAAGTCCACAAGGTCAGATTGTCCCTAAGGAGTTGCATTATTAA
GGTGCTATCTTTGTAGGATTCCTCGTTCAGAGTGTCAAGCTCTGAGATAGCTTCATCGAACGCC
TGCTTAGCAAGGTGACATGCCCTTTCAGGTGCGTTCATGATCTCGTAGTAGAAGACAGAGAAAT
TCAAAGCCAAACCCAATCTGATAGGGTGTGTTGGAGGGAGCTTAGCCTCAGCAGCAGTAGTAGC
AATCTCATAGGCTTTCAAAGACTGATCAGCAGCCTCTTTCCTCTCGTTCCCTGATTTGAACTCA
GCAAGATAGCGGTAATAGTCACCTTTCATCTTGTTGAAGAAGACAGTAGATTCACCCTCGGAAG
CCGAAGGAATGAGATGCTCATCTAAGACAGACATAATATCAATGCATATGTTAGAAAGCTCTAA
CTCAACCTTCTCCATATACTCTTTGATCCTCTTTACATTAACATCATTCCCTTTCACTGCTTCC
TTTTGTTCAATCGACGAGAAGATCCTCCACGAAGCTCTCCTTGAACCAATCACGTTCTTGTAAC
CCACAGAGAGTAAGTTCCTCTCTTCCACCGTCAGATCAACATTCAATTTCGCAACACTTTTCAT
TGATTCCACCATTT

Genomic sequence CTCCTTCTTCTGAGATGTCAGAAGTCCACAAGGTCAGATTGTCCCTAAGGAGTTGCATTATTAA
GGTGCTATCTTTGTAGGATTCCTCGTTCAGAGTGTCAAGCTCTGAGATAGCTTCATCGAACGCC
TGCTTAGCAAGGTGACATGCCCTGAAGAGAAAAGAGCAAGAAAAAAAAATCTCAAATCTCCAAA
ACAATGAGTCTTTTTTCTTATCTTAGTAGTATAATTAACAATCTGTAAACCTTTCAGGTGCGTT
CATGATCTCGTAGTAGAAGACAGAGAAATTCAAAGCCAAACCCAATCTGATAGGGTGTGTTGGA
GGGAGCTTAGCCTCAGCAGCAGTAGTAGCAATCTGTAAAGGAAAGAAACAAACAAAAACTCAAA
AGTAAAGTAACGAAAAACCAAGAATGTCCAGTGATCAATAACACTACAAATCACTATAAGAACA
CCTCATAGGCTTTCAAAGACTGATCAGCAGCCTCTTTCCTCTCGTTCCCTGATTTGAACTCAGC
AAGATAGCGGTAATAGTCACCTTTCCTACAAAAACCAAAACAAAATCTTCAGACACACAACCTT
AAGTTAAACACCATGTAAAGAAGCATTATAGAGCTTACATCTTGTTGAAGAAGACAGTAGATTC
ACCCTCGGAAGCCGAAGGAATGAGATGCTCATCTAAGACAGACATAATATCAATGCATATGTTA
GAAAGCTCTAACTCAACCTTCTCCATATACTCTTTGATCCTCTTTACATTAACATCATTCCCTT
TCACTGCTTCCTTTTGTTCAATCGACGAGAAGATCCTCCACGAAGCTCTCCTTGAACCAATCAC
GTTCTTGTAACCCACAGAGAGTAAGTTCCTCTCTTCCACCGTCAGATCAACATTCAATTTCGCA
ACACTTTTCATTGATTCCACCATTT
Conservation Information
Conserved circRNAs NA
PMCS 0.296259575
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a