Detail information of AT2G03440_circ_g.2


General Information
CircRNA Name AT2G03440_circ_g.2
ID in PlantcircBase ath_circ_012677
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1039741-1039897  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G03440
Parent gene annotation Nodulin-related protein 1
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03440.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGTTTATGTGTTGTTGGCTCGCCGTGACCGGGTTTATGTGTTGTTGGCTCCGTGTGACCGGGT
TTGTTTTTGTTGTGcttcggctacgatcttggcactagccatgagctcagcgttcgtagccggt
ctgtgtgttgttggatcggtgttggagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGGCTACGATCTTGGCACTAGCCATGAGCTCAGCGTTCGTAGCCGGTCTGTGTGTTGTTGG
ATCGGTGTTGGAGACCGGTTTATGTGTTGTTGGCTCGCCGTGACCGGGTTTATGTGTTGTTGGC
TCCGTGTGACCGGGTTTGTTTTTGTTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.174615761
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017