Detail information of Os12g0576600_circ_g.1


General Information
CircRNA Name Os12g0576600_circ_g.1
ID in PlantcircBase osa_circ_012095
Alias Os_ciR7436
Organism Oryza sativa
Position chr12: 23808310-23808681  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os12g0576600
Parent gene annotation Metallophosphoesterase domain containing protein. (Os12t0576600-
01);Metallophosphoesterase domain containing protein. (Os12t0576
600-02)
Parent gene strand -
Alternative splicing Os12g0576600_circ_ag.1 Os12g0576600_circ_ag.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0576600-01:2
Os12t0576600-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGATCCTCGACAGCGGCTGCTCACCGGGGTGCGCCGCCGCGCAGACAATCAGCCATGTGGCCA
CCACCCAAAGCCTGATCATACTCCTCCTTCAGTGTCctaaaattagctggagaaaacactccaa
tccagtcgtcattggaggggcttggatggaagaactctacctctacccattcactgttctgacc
ctgcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAAATTAGCTGGAGAAAACACTCCAATCCAGTCGTCATTGGAGGGGCTTGGATGGAAGAACT
CTACCTCTACCCATTCACTGTTCTGACCCTGCAGCATCAAAATTCAGAAGCACCACCCAAAACT
GTCAGTAAACCATCTGTGATTCAGTGTGCAAATGCTAATAACAGTGATGTGAACTGAGAAATGG
AGCTGACCTTCAGTCCAAGAACCCAAGGCGATGCCTTGACATGCGCCGATTCGTTGACGGCAAG
GACCGTCCTCTCGACAGCGATCCTCGACAGCGGCTGCTCACCGGGGTGCGCCGCCGCGCAGACA
ATCAGCCATGTGGCCACCACCCAAAGCCTGATCATACTCCTCCTTCAGTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.423468731
Functional Information
Coding potential Y
Potential coding position 23808364-23808310(+)
23808666-23808605(-)
Potential amino acid sequence MEELYLYPFTVLTLQSKNPRRCLDMRRFVDGKDRPLDSDPRQRLLTGVRRRADNQPCGHHPKPD
HTPPSVS*(+)
MIRLWVVATWLIVCAAAHPGEQPLSRIAVERTVLAVNESAHVKASPWVLGLKGQNSEWVEVEFF
HPSPSNDDWIGVFSPANFRTLKEEYDQALGGGHMADCLRGGAPR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015