Detail information of BGIOSGA036490_circ_g.2


General Information
CircRNA Name BGIOSGA036490_circ_g.2
ID in PlantcircBase osi_circ_003337
Alias 12:4952836|4956961
Organism Oryza sativa ssp. indica
Position chr12: 4952836-4956961  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA036490
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA036490_circ_g.1 BGIOSGA036490_circ_g.3 BGIOSGA036490_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA036490-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAACCTAAAACATATACTGCGCAGGAAATCTTGCTGGTCATAAGGTACAGCATCCCCTAAGAT
ATCATCATTAGTAATGACTTTATCATCTTCGTGATTcagggaacaccacccgggcaccgtccat
aagtttctttctacctctctcatagaggaaaatgaactgacgattctcactgccaatctacaac
gattgaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGGAACACCACCCGGGCACCGTCCATAAGTTTCTTTCTACCTCTCTCATAGAGGAAAATGAA
CTGACGATTCTCACTGCCAATCTACAACGATTGAACAATGGAAAGAAAACTTCAATAAATAACT
AAGTAAATCCATCTGAAAACTTTGCATGGAAGAAAGCAGACCTCGAACAGAAAGTCTACTGAAT
TCATCTCTGGATATTTCCACTTCAAAAGACCTTCATGGGTACGAGTCACGTAAGGATCATCCCA
GCCCTACATAAAAAACAACAGAAACACATGAAGAAAAGAAAAACAGAGAAGTTCCCATTTTGTG
TAAGTTGGGATATGACGGTGACATGCATGGAGGGATGAAAATCAGCTGCATGGAAGCAGCTATT
CTGGCGGTTAACAAGGCGTTCTGAAGAGATGAAATTATCACAGAATCAACTTGATGGGATTTTG
CCACAAGATACAAATTGATCAAAAGAGAAGTCTCAGCATAAATGAGACATGCACTAGAGTGAAG
CATAATCCTGAATTTCCTAGCACAAACATTCCTAGCTTCACAACAAATACTTGAGGACAGCAAG
TATTTGGCTGACAAAGGATTCTTGTCCCTAGTTAAGCTTGATTCATTGTAATTATTAGATATGA
GACTTATAACATAGAGCAAACCACTTCCAGAACCAGTTCAACAGTAAGAATCCACCCATGTGAA
AACAGAAATTAGTACATCTACTCCGAATACACGGCAAGAGCATCTGGAGGATATGACCATGGGC
CTAACAGTCATAGTTGAGCTAAACAATGCTTATTACTCCCTACAGTCAGAAATACATGCCATTA
AACTCTCCAATCAAAAGTATTTTACCATAAAATTGAATAAGGATTTACAAATATATAAAAATAG
ATAAACATGGTATAAGTTATGTTTTGTGGACTGTCAGTTTCCAAAACACGCATTTGTGGCAGGA
TCAACACACTAGATTTAAGAACAGAGGGCATAAACATCACTAAATATCTAGTTGATTGTACAAG
GCAACATGGCAGTAGTTCCAATGTTGCATAAGAGAGACTAGAAGAATGCAAAATCATCACAGTT
AGAGTGCAAAGTGGCAAACAAGACATATGACAACCATACCTATGATATAAACCCATCAGAATCA
GGAAAAAAGTTGAAGGGATAACTTCTTTGTAATAGCTTTTCTAGTTTTGAAAGGTACAAACAAG
ACACAAGAATCCTACCTGTAATATAAGCCCATCAGATTCATGACAAAGCTTTGGAATAAACTCC
TTCAGTATCTTGTTCACTGCAGAAAGTTGCCAGAAATCCTTTCTCCTTACCTGATAAAAGCCAG
ATATATTTCAATTTTAGTGCACCAACATAGTATGAAAAAACAAATAAGTCCAAACTTCCATATT
CCATGTCGGTACCGAAAATAGTTCCATGTCATATTTGTATGATGGACTGCGTCCTTTATCATGA
TAGCGTGGGCGTATTATCTCATCATCAAGTAATTTCCACCTCTCAGAAAAAGGCAACTGCATCC
AGAAATCAAACTATAATAAGTATGTACATATGGAGCACAAAATAACAAACATGGCAAGTAATGA
AATTATGTGGCCTTAAGCTAATCAATTCTTCAGCAATGTCATTCTAACTTAAAATTAGTGGCAC
CATACCCGTGCATGCAACAGATCCCAAATAAATATACTGTATACTATAAGTAAAAAATACAAAA
TGCAGTAAATAAATACTAATTTAAGTTTAAAACACACATACATGATAATATAGACTAATTGACC
ACCAACCTATACTTGTATGAAAAAATACAATATATTTCTATTAAAATCTTACAAATAACGCACA
CATTCCTACATATTTAAAACCACAGAGGTATGGAGTGGGTGGGTGTAGAACATTATAAAATCAC
TCACTCTTTTAGAGAGTAAGATGTATATTGGGATCATTATAAAAATCGATTCAATCAGCAAGCA
TCTAAACCAGACATGAGAATTTTGACTTATTAATAAGTAGCATATAAATCTTCAGAGCAACCTC
TAACAATATCCATACTGCTCTGTAATCACTATTCGAATGGGAGTGCTTGGGAAATATTTATACG
AAATATTGTACATAAAAAAATCAACATCTTAGATTAATAGTGTCAACTGAGAAGACCACAAAAT
TGCATCACCAATTAATGATAACATATGAAGCATATCTACCTTGACTACAGATTGGGAATTAATT
GACATTAGATCATATGCCAAGTATCTCCTCTTCAATCCCAAATCCGGTACAGTGTCAACAATCA
TTTCTCCGTCAATTAACGTATAGTGGTGAAAACCCTTCAGACAGCAAAAGGAAGTTTGAAGTTT
ACAATTTGATGGTGAAAAAGAGAATAAAATGCACTATGCATCACAATGGGAATCTTACTTCATT
CGAATTTCTAAGGGGAAAACGCATCTGAACTCTTCTAAAGCAGAAGTTCCGATCAATTAGAAAG
CAACCATCACGTGTTATAAGCATCATGTATCGCGTTCCATCAGCTTTCCACGTAGCATAATAAT
ATCGCTGTCTCAGAATTTGCAGATTCTCACTGTATATACAAAATATAAATGAAATGAGTTAGGA
GGAAAGGACCAGAAGGCCAACAAAAGAAACTACAAGATAGGGGGGTGAGGTGAGGGAAAGGAGA
CAATTGCAATACAAAGTATGGACTAGGGGGAAATTACTAATGTGTGAATGATGTTCTTAAGTCC
CATAGATTCTAGAATAAGAAAGACAAAACATTATGTATGCCCTCTCATGATCTCACCAGAAAAT
GTAGCATCAACTGTTACAGAATGAATTATATGCGCCAGGCACAAAAAAAGGCAAAAGTTGAATC
CCTCCGAATGACCCAAATGCCACACAGAAAGCACCGTGTAGCAAAGGGACTGAAGGGGTGCCTA
ACTGTCAAAGGAATTTGGTGCAGAGTGGGATATTTAAGACAAAGGAGGCCAGTATAAAACAAGG
GTGGCGCAAAATAAAGTGAGGAAGTGAATTATGACAGCATTATGGGATGGGTAGGTATCGAAGT
TGAGTACTGTGTACATCTTTGATGGAAGGTTGGAAATCTAAGCAAATTCCAGCCACATATACAA
GGTTAGTGCTCAAACTCCTGCAAAGAGTTGAAGTTGATTTCTTAGTCTTCAGTATGTATTACTT
TACCCTCAAACTTATGTGGTTTATTTTCATCCTTCAGATGCTTTGCTTGCTAGAACATTAATGC
CTTAAAAAGTAAACCATGTGCATAGTTGCTCAACTACGGTTACATAAGGATTGCATAGTTGCAT
GTGATATACATCTATATTTTATGTTTTTCACATGCCTGAAATAAGGTACTTGGCATGACCTTTG
ATATAAACCGTCAAGTATTAATTATTAAATCAGCTGTTGCAGTCACTAATTTATTTGTCACTTT
GCCAAAAGAATCAAAATTGGACATAAATCCATACCTGTTAAGAGAAACTGGATGAGATCCGGGA
AACTGAGCATTAGCTCTACCCTGGTGAGTGAAAGGGTTAGCTGAGATTGTGATACTAATCAATT
CATATGTCTATTGCTATTTTCAAGAAAATAGAAGGTTCAAAAATTATACTCTGAATTTGCATTT
AGTAACATCATATCATGTTGCATGCAGTTGCATCAGCTTACAATTATTTGAAATAAGTTTGCAT
CAAAATTGTGCCACAGTTAATCTAAGTAGTAGTTGTGATAAAACAAAAGGATTCCTGAAATCAT
TTGAAGCAAGATAAAAACAACTTTCTAAACTAGTAAGAAAAAAATGAAACAGCAGTATTATATA
ATCAAGAAAGCAAGCTACAAGTTCATACTACAGTGAACATAGAAACAAAGCTTTCAAAATATAT
CTTTCAGACAGTACTGCAAATTAAGATGTTTGTAATCAAGAAGGGGAAAACAATGTGACTCAAC
AACAATATAGCAAAGTAACCAACAACGCGTTGTAAACTTACACTGGGCACTAATTCAAGTAACC
TAAAACATATACTGCGCAGGAAATCTTGCTGGTCATAAGGTACAGCATCCCCTAAGATATCATC
ATTAGTAATGACTTTATCATCTTCGTGATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 4955359-4956950(-)
4952888-4956950(-)
Potential amino acid sequence MMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEGFHHYTLIDGEMIVDTVPDLGLKRRYLAYDLM
SINSQSVVKLPFSERWKLLDDEIIRPRYHDKGRSPSYKYDMELFSVRRKDFWQLSAVNKILKEF
IPKLCHESDGLILQGWDDPYVTRTHEGLLKWKYPEMNSVDFLFEIGSENRQFIFLYERGRKKLM
DGARVVFPESRR*(-)
MREVERNLWTVPGWCSLNHEDDKVITNDDILGDAVPYDQQDFLRSICFRLLELVPSGRANAQFP
GSHPVSLNSENLQILRQRYYYATWKADGTRYMMLITRDGCFLIDRNFCFRRVQMRFPLRNSNEG
FHHYTLIDGEMIVDTVPDLGLKRRYLAYDLMSINSQSVVKLPFSERWKLLDDEIIRPRYHDKGR
SPSYKYDMELFSVRRKDFWQLSAVNKILKEFIPKLCHESDGLILQGWDDPYVTRTHEGLLKWKY
PEMNSVDFLFEIGSENRQFIFLYERGRKKLMDGARVVFPESRR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021