Detail information of AT4G26230_circ_g.4


General Information
CircRNA Name AT4G26230_circ_g.4
ID in PlantcircBase ath_circ_032899
Alias NA
Organism Arabidpsis thaliana
Position chr4: 13286320-13286487  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT4G26230
Parent gene annotation Putative ribosomal protein
Parent gene strand +
Alternative splicing AT4G26230_circ_g.3
Support reads 3
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT4G26230.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCGAGGAGAATCAGAGTCCGAGTTGCTCGTAAGAGAAATGATGATGAAGATGCAAAGGAAG
AGTTCTTCTCTCTTGTCACTtttgctgagaaggaaatggggacaaaggatgtgagagtggatgt
taaattgaacaagcagatttggagcaaaggtatcagaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGCTGAGAAGGAAATGGGGACAAAGGATGTGAGAGTGGATGTTAAATTGAACAAGCAGATTT
GGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCAGAGTCCGAGTTGCTCGTAAGAGAAATGA
TGATGAAGATGCAAAGGAAGAGTTCTTCTCTCTTGTCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.466764829
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017