Detail information of Os05g0583100_circ_g.1


General Information
CircRNA Name Os05g0583100_circ_g.1
ID in PlantcircBase osa_circ_042198
Alias NA
Organism Oryza sativa
Position chr5: 29022368-29022549  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRI-long
Parent gene Os05g0583075
Parent gene annotation Hypothetical protein. (Os05t0583075-00)
Parent gene strand -
Alternative splicing Os05g0583100_circ_g.2
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os05t0583100-02:1
Os05t0583100-01:1
Os05t0583075-00:1
Os05t0583100-01:1
Os05t0583100-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTAT
TGTATGACTCAGCACATAGCATCATGGgactcagtggaacactacctatctcatgctgctggct
gccttggattataagcaggccttttctactctagagacaagtgatgacaactac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 182
Transcript exons: 29022368-29022549
GACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCT
ACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTG
AGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGG

Genomic sequence GACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCT
ACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTG
AGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGG
Conservation Information
Conserved circRNAs NA
PMCS 0.291211905
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study