Detail information of Zm00001d048139_circ_ag.1


General Information
CircRNA Name Zm00001d048139_circ_ag.1
ID in PlantcircBase zma_circ_003047
Alias circ1427
Organism Zea mays
Position chr9: 150710262-150714999  JBrowse»
Reference genome AGPv4.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d048140_circ_g.1
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGCAAGGAAAAGCGTAAGTACCCCAAAATCGCGAGTAGTATGGGCAACCCCTCATCGGTTCC
ATTGTACAGCGATAGCTCCTCCACTGTCCACAACCTcttctccaccttcttgctggctccattt
tgaattgcagccaggtattttagcttcatcactcttctgcttttcaagaagctgtgcacctctc
tttgcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCCACCTTCTTGCTGGCTCCATTTTGAATTGCAGCCAGGTATTTTAGCTTCATCACTCTT
CTGCTTTTCAAGAAGCTGTGCACCTCTCTTTGCCTTCATTTCTACACCCTTCAGATATTTCGTA
GGATTCCCTTGACTGTCATAGTAACGTCCAATAAGTTTACCAGCAAATCTGCATCATATATGCC
AAGAAATGTTACAAGGGTATATATTATGAGTTGAGTAGTTTCTCTAACATGATCCACTGTGTGT
TCCATATGGTATACACATTTGGTACTAACTGAATAACACATGGTATGGACATATGGTGGTGATG
GATTTAAGAACATGATCAAGAGAATCTAGAGCAAGTGCTATAGCACAAACACATAATTAGTGTT
CCAAATCGTGCTCCACTAGCCTGCCTAGGGACTAGGTGCCACCAAGCTGCCAGCCTAGCACCTA
GCATTTCCTGGAAAACTGCATACAGTTCTATGAAGCCTCATGAAGGAAATAAGTAACATGAAGA
ACATGAAGGTGGCTCTTAGAAAGGAGCTCACATATATCTTTCAAAGTAAAACTTCCTCCAATCA
ACAATGCTGTTTACCTGAAAGGAAGTTGGAAATCAATCATATTGAAAATAGTGGAAAAAATAAA
GAGAGAAAATTAATTTCTAGCATGTCCACACCTATATCCATACAGGCTAGAAGCACAAGAGAAC
AAAGCTTAAACTGGAACTAACTCTAGTAATTAAAAGGTTGGTAACTTGGTACATAAGCAAGTAA
ACACCCCACTAGATTTTGCACAAGTGGTAAGAGAAGGAGACACTACACTTCTATATTTCAGTTG
AAACTCACTGCCATCCTACCCTTGATTTATCAATCATGGTACTTTTAACATTTTTTTCACAAGC
TGTATATGTCTAAGCTTCATATTTGCATTAACTATGAGGTTTACTAATACGAATAATCCATACA
TAGTGTGTTATACCTCACTGCTTGATAAACCCTGTAAGGAATCAGTCAAACCATCACCTGTTGA
AACAGAGAGGTTATTCTAGTAAAAGGATATACTTAAGCAGTCACATATCATTCGTGCTTAATGA
CCATTACTTTTTTCTTATGGTGAAATTATTGTTTTTTAAAACAACTTTATTAGAAGCAGAACAG
CTAGATTATCCGTTAGAGTATATTAGACAACTCCTGATATGGTTGGTTTATAATTGATTGTAAT
CCTGGAATAACCTTTCTTATATTTAGGATAATCTTACCTTATCTCTAGGATAGGCTTCTTGCCC
TCCAAGTCATGTACTCCTATATATTCTCCCTAGAGGCTCAATGCAAACATCCCACATATTATAC
ACATTCTCCTTCCTTCATGGTATCACAAGTTTAGGTTTTCGATCCAACAGGTGTCTTCCGCTGC
CACCGCCACGCCGCCCCCGGGGAGATCGTTCTCCGCCGGGGGCAGCGTGGCGGTGGCAGCGGAA
GACACCTGTTGGATCAAAAACCTAAACTTGTGATACCATGAAGGAAGGAGAAATCCCATCGCGC
GTCGCGTCATCCAACAGCAACAGATCAGGAGTGTCACCTGAGGGTATGTGGATCCGCAAGATTG
GGGCTTCTCCGTACGCCGTCGTGGTGACGGCCGTGAACTTTGGCGCTTGGTCGGGCCGCTCTAC
GCGCCGTCATGGAGGCAGCAACAAGCGCCGACCTGCCCATGCCCCACCTCCGATCTGTCCCCCT
CCGCCGCGGACCAGAGTCGCGTCTCTCATTGTGGGCGGTGGGCGTGGGGCCGCTCCGCCCCTCC
GTCGCGGGTCGAGGCCGCGCCGAATCCAGTCGTGGGGCAGTTGTGCTCTTACGCCACGGGGCGG
GCCGCGGCTCCCGCTGCGAGGCCACGCCGTCGGGCCTCCCCTCGCCTTGGAGCTGTGCCATGCT
CCTCACCGTCGAACATTATGTGGAGAAACGAGTGGAGATGGGTGCAGGCTAAGCACTACCCAGA
TTTGTTGTTGTTGTTGTGTATCTTTTTCTTTTTTTCCCGATCAGAGATCAGGTTTGCGTCGCCC
ACCGCCAGTCGACTCGCGCGTCCTCGACATCGGCTTCAACAACACCGGCTTCCTCATCTTCTTC
GACGGTGCAACTGGCGTGGCCTGCAACGTAACTGGAACGCCTGCCTGTGTCGCGCCTCTTCGTT
TGCACGTCCATCTATGTCAGCTCGTCTCGCCACCATCGATCGGGAGGCTCCACCACTGACATCA
CCATCGTCGTTTCTGCCTCGCACGTCGTCGGCCTGATCAACCGATCGCGGGCGAACCACCCTCC
CGCGACGTTTGTCGTCCATTGCGTGATGCTTCGCCAAGCAAGAGGGCCGTCGATGCGTCGCCTC
CTCGGGCAGCAGCATCGCCGCTTGTCGTTGACCAACGTCGTTGCATCTACATCATCGTCGACTT
CGTCGGTGCGCGTCTCCCGCGCATGGTTTGAGCAAGCTATTCGACACATGCGAGTTGCGACAGC
ACACCCGTCGTTCTGGGTTGCGAGTCCTCCTGCATACTGCGTCAACACCTTGCGCTGGTGTTGC
ACCTGCCCTAGGGGTGACAGCCACCGTCGCCGGTCTGCACCGCACTTGTCATAGAGTTCTTCGC
CGACAAACACCACCATCGTGCTCCACTGGCACCATTGAGGCTCGTTTCCTATGCGTCGTGGCTC
TCACCGTCGCGACTCCAGGAACCTCGATATGTCGCTACGCCTACCTCTTCGCTTCGTCCAGCAC
AACCTCGTCGCCAGCATCATCGTCTCATCCTCGACTACTTCGTCTACTCCGCTCTGACAACCGT
GCGTTGCGCCGGCACTCCCGCCATGCTACACCACAACCGTCGCGGAGGCTGTCTCTGCTGGTCC
CTTGAGATGCTGGCACATATGGTTGGGGCCCTCTACCTAGTACGTCCGGTACTGGCACCACCGA
CACGTGAATTCATCCACGACACGTTTCTAGGCTTGGCAAACCTGGAACACACATCTTCCATGGT
TTTTTGACGCGTCGCCCTCGGGATCAACACCCTCATCTGCCTCGACGCATCACGCCTACGTCTA
CGGCGACTTCTCAGCGCCACCATCACCATGGCGTCCTCTAGCGTGCTGCGGGCTTTCCCGCATA
CCGCACCAGCGCCCGCGACTTGTGCGGCTTGTCTTCTCCGACGTCCTCGATAGCTTCCTCGACC
ACGGCTACGCTACGCACGTCACCTCGACGACGGCTCGACGCCCTTGCAACGCCCTTGCACTCTG
CTACCTCGACATTATCGGCACAAAGGGCTATCATCTGCATGCGCTACTCCAATCGCAGCATTCG
CACAGGTGTTCCTACTGTGTGTGTGTGGGGATATCTCCATTATTCTCTAGTCTGTCTGTTTATG
TTGCTAACGCTACAACTGCGGGGGGATGTTAGAGTATATTAGGCATGTTAGGGTATAGTAGGCA
ACTCTTGATATGGTTGGTCTAGGATTGATTGTAATCCTAGGATAACCTTCCTTATATTTAGGAT
AATCTTCCTTATCTCTAGGATAGGCTTCTTGCCCTCCAAGTCATATACTCCTATATATTCTCTC
TAAAGGCTCAATGCAATACATCTCACACATTATACGTATTATCTCCTTCTTTCATTATCTTTCA
TGAAGTTTGGTAAAGGCGGAATTAAGATCTTTCATCCTCCACAAAAAAATAAGTCATAATTCAA
GTATCTGCTTCACCATATAACAAGTCATAATATCTGCATTTTTTCACCAATATAAGCCCCGTAT
TTCTTTCTACATTAAACCAACAGGCAACTTTTTTTCACTCTCTTTTATCCCATCTTATAGTGCG
AATAGTCAGTAGTAACTGCTTCTAAGATATTGAGTAGGCATGTTCGTTAGATGTCTTGGTCGTT
CCATCTTTTGGCCCTTATGAAATTTGTAGAATCAATATACTGCTAGGAGTAAAAAGATCATGCA
AAAGAATGTTTTTGCTTTTGCAGTTCAAATGATCAAGAGGGCACCAAAATTATCTCTATGGAAC
CAACATTAACTCGTGGCCATCAAAATAAATTACTAAACTAACCAGCTAGCGATAATATGCAGAC
TTGCCTGTAAAATTTCCAGAAACAAATGCCCGTGATGCATCCCTGTCAAAAGAATGCTGTTGTA
ACATCAGCATGTGAAGCAGCAAAGCAAAAAGGATATGGAAGTTTTGATGTTTGCCAAAGCTGAA
ACATAAGAACTACCCTCCTATAGTCTATACTTTATAACACCAAGCTACAGCATACAATGTAATT
CATAACAATGAAATCGAAAGGGGCACTAGAAATCTAAGACTGCAACCTCCCAGCAAAATGATGA
TAACCTCCTCCAGGGCCATAATGTGACCTCCCTTTTGTGACGTCAAACACTGAGCTGCAGTGTC
AAATAAAAACCAACATCATCCATACAAGCCAAGCCAGTTGAATAGTCAAGACAGTACACTGGAA
TTTACTGAGAACTTCATTTGTAGAATTAAAAAGAAGGTGTGCTGTGTCACTGTGTGCTTGAGTT
TTAACTTATTTATCATATCACAGTTCCCTTTTCTCACGGTAATTAAGTATCTTATATTTAAAAC
AAGTCGGGGGCAAGGAAATGTAGGCACATGAGGGCAAGGAAAAGCGTAAGTACCCCAAAATCGC
GAGTAGTATGGGCAACCCCTCATCGGTTCCATTGTACAGCGATAGCTCCTCCACTGTCCACAAC
CT
Conservation Information
Conserved circRNAs NA
PMCS 0.018576646
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b