Detail information of AT2G05170_circ_g.2


General Information
CircRNA Name AT2G05170_circ_g.2
ID in PlantcircBase ath_circ_012839
Alias Ath_circ_FC1168
Organism Arabidpsis thaliana
Position chr2: 1872930-1873296  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method find_circ
Parent gene AT2G05170
Parent gene annotation Vacuolar protein-sorting-associated protein 11 homolog
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered AT2G05170.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCTCGAAGGACGGGTTTTCTGTGATTGCAGAGTACTTTGGGAAAGGAATCATCAGCAAAACT
AGAGATGCAACATCTTAATTCTCTTCACGCCTGAAGggaaacgactaaaaacatgagaaaagag
attgaagatctcaggaccaatgccagaatatttcaacttagcaagtgtactgcttgcactttca
cattggat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAACGACTAAAAACATGAGAAAAGAGATTGAAGATCTCAGGACCAATGCCAGAATATTTCAA
CTTAGCAAGTGTACTGCTTGCACTTTCACATTGGATATCCCAGCTGTCCATTTCATGTGTATGC
ATTCATTCCATCAACGCTGCCTCGGTGACAACGAAAAAGAATGCCCCGAGTGTGCTCCCGAGTA
CAGATCTGTGATGGAAATGAAGAGAAGTTTGGAGCAGAACTCGAAAGACCAAGATCTGTTCTTC
CAGCAAGTGAAAGGCTCGAAGGACGGGTTTTCTGTGATTGCAGAGTACTTTGGGAAAGGAATCA
TCAGCAAAACTAGAGATGCAACATCTTAATTCTCTTCACGCCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.391015437
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a