Detail information of BGIOSGA031412_circ_g.1


General Information
CircRNA Name BGIOSGA031412_circ_g.1
ID in PlantcircBase osi_circ_008698
Alias Chr10:24416984_24417690(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21053061-21053767  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA031412
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031412-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATAGTTGTTCTTTGCTGGTCTCCACAATCGCCAAATTCTTACTTTCATCACTACCATGATT
CGATGGATTTCCAGGTTTAGGAATTCCAGTGGTTACcctatatgtgagcttgtaggagtctcca
agccagttaaagatgacctctgactattatatctttccaaagcagcttgcaaaagtgtccccca
tggaggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTATATGTGAGCTTGTAGGAGTCTCCAAGCCAGTTAAAGATGACCTCTGACTATTATATCTTT
CCAAAGCAGCTTGCAAAAGTGTCCCCCATGGAGGCTTACGACCACATGCTGTTCAGTAATACAA
ATAAATGAGAATATAGGATAGAGATAAAAAATTATCACTTTGAAACTTTGCAATGGAACCAAAC
AAACCAGGTTCTCCAAAAGCTGACACCATGTAAGATTCTGCCGGTGGCATTCCTTGACTGCCAA
AAGAAATAGTTTTCGCTAATCAACACATTTGCATATATAACCAACTCAAATTTAAGAGAGTTTA
GAGTTTACATGAGAGCTCCATAAACAAATATCTGTGCACGTAGCTGCACATGCTGTAAATCTGT
GAAAGGTTGGTGCCCCAAAGCTGCAGAAGAAACTGAAGTAGTCAGGTCAGGTAATTTATATACT
TAGACCACTTGTACACAAGAGATTTACGACTTTACGCACCATTGACATCAGGAGTTGGATGTTG
TTGTTCCTGCTCTAGTGGTGTACTTTTGGCTTTAGTGATATGACCAATATGTGAGCTTACAGAA
GACCCCTCAGCACTTCCAACCACTTTCCTTCCAGATAGTTGTTCTTTGCTGGTCTCCACAATCG
CCAAATTCTTACTTTCATCACTACCATGATTCGATGGATTTCCAGGTTTAGGAATTCCAGTGGT
TAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021