Detail information of Os04g0376600_circ_g.1


General Information
CircRNA Name Os04g0376600_circ_g.1
ID in PlantcircBase osa_circ_023552
Alias NA
Organism Oryza sativa
Position chr4: 18408910-18409394  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0376600
Parent gene annotation Similar to ER lumen protein retaining receptor. (Os04t0376600-01
)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0376600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTGTGTAAAGATGCTATTATGATTTATGGATTTTGAGTGATGTACCATGATTTGCAGCATTG
CTCTCGCACTGCTCCGCCGCTTGCCAGTCCCAAAGActcagatgtgcccaaggtagaacttatt
tcacgatttccatcttctgattgattagactcagaagggtactccaatatgcggcggcgctttg
attcccga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCAGATGTGCCCAAGGTAGAACTTATTTCACGATTTCCATCTTCTGATTGATTAGACTCAGAA
GGGTACTCCAATATGCGGCGGCGCTTTGATTCCCGAGATTCCTCTAGGTCCAACGTCTCCTTGC
AGGTGAAATCTGACTCGAGTAACATCTCCATTTAAGCAAACATTCCAGAGGAATAACAATTGAT
GGTGGTAAGAACAAGAAACTACCTACCATCAATATCAAAGAAGCCGCGACAATCTCTTAGAGGA
GTTTGATTGCCCAGCAATCCCAGTAGGTCATCATCATCTTGATTGAGGCAGTCCCACATGAATC
TAGAAACATCTAATGTAAAAAGAAACAATCAAATAGTAAGTGGAAACTCGAAACAGATGCTCCG
AATCTGTGTAAAGATGCTATTATGATTTATGGATTTTGAGTGATGTACCATGATTTGCAGCATT
GCTCTCGCACTGCTCCGCCGCTTGCCAGTCCCAAAGA
Conservation Information
Conserved circRNAs osi_circ_014276
PMCS 0.125969759
Functional Information
Coding potential Y
Potential coding position 18409344-18408926(+)
18409226-18409343(-)
Potential amino acid sequence MICSIALALLRRLPVPKTQMCPR*(+)
MWDCLNQDDDDLLGLLGNQTPLRDCRGFFDIDDFTCKETLDLEESRESKRRRILEYPSESNQSE
DGNREISSTLGTSESLGLASGGAVREQCCKS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017