Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d027503_circ_g.2 |
ID in PlantcircBase | zma_circ_006379 |
Alias | Zm01circ00022, GRMZM2G392956_C1 |
Organism | Zea mays |
Position | chr1: 6832037-6833000 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d027503 |
Parent gene annotation |
Calcium-binding EF hand family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d027503_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d027503_T021:2 Zm00001d027503_T010:2 Zm00001d027503_T041:2 Zm00001d027503_T033:1 Zm00001d027503_T027:2 Zm00001d027503_T039:2 Zm00001d027503_T035:2 Zm00001d027503_T001:1 Zm00001d027503_T022:2 Zm00001d027503_T036:2 Zm00001d027503_T017:2 Zm00001d027503_T003:2 Zm00001d027503_T013:1 Zm00001d027503_T007:2 Zm00001d027503_T002:2 Zm00001d027503_T018:3 Zm00001d027503_T031:2 Zm00001d027503_T009:2 Zm00001d027503_T024:2 Zm00001d027503_T029:2 Zm00001d027503_T020:2 Zm00001d027503_T012:2 Zm00001d027503_T025:3 Zm00001d027503_T019:2 Zm00001d027503_T004:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.1874655 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6832220-6832091(+) 6832072-6832969(-) 6832250-6832969(-) |
Potential amino acid sequence |
MTIRGCNRRHITIIPKRWHFSIFSRNWVFLYCTIILNNTKPFIFKFIPVFIPLNESLLWPRFPT CNFLFCWEMSHACQSRKI*(+) MTHLPAKEKVTGWEPGPQEGLIEWDEDWDKFEDEGFSIVKDNGTIQENPVSAENGKVPSLWDDG DMSPVASSNGHIKEERRYSGGDQVAESEIAYDFGDESVRSPGSAGRSASGSPFKSSGFGMHDSS PSKRESYRLGTWATRGTH*(-) MSPVASSNGHIKEERRYSGGDQVAESEIAYDFGDESVRSPGSAGRSASGSPFKSSGFGMHDSSP SKRESYRLGTWATRGTH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |