Detail information of Zm00001d027503_circ_g.2


General Information
CircRNA Name Zm00001d027503_circ_g.2
ID in PlantcircBase zma_circ_006379
Alias Zm01circ00022, GRMZM2G392956_C1
Organism Zea mays
Position chr1: 6832037-6833000  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d027503
Parent gene annotation Calcium-binding EF hand family protein
Parent gene strand -
Alternative splicing Zm00001d027503_circ_g.1
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d027503_T021:2
Zm00001d027503_T010:2
Zm00001d027503_T041:2
Zm00001d027503_T033:1
Zm00001d027503_T027:2
Zm00001d027503_T039:2
Zm00001d027503_T035:2
Zm00001d027503_T001:1
Zm00001d027503_T022:2
Zm00001d027503_T036:2
Zm00001d027503_T017:2
Zm00001d027503_T003:2
Zm00001d027503_T013:1
Zm00001d027503_T007:2
Zm00001d027503_T002:2
Zm00001d027503_T018:3
Zm00001d027503_T031:2
Zm00001d027503_T009:2
Zm00001d027503_T024:2
Zm00001d027503_T029:2
Zm00001d027503_T020:2
Zm00001d027503_T012:2
Zm00001d027503_T025:3
Zm00001d027503_T019:2
Zm00001d027503_T004:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCAGAGGAGAATGCAGTGGAAGTATTTAACCTTCATCTTCAAATTTATCCCAGTCTTCATCCC
ACTCAATGAGTCCCTCTTGTGGCCCAGGTTCCCAACctgtaactttctcttttgctgggagatg
agtcatgcatgccaaagccggaagatttaaatggactccctgaggcacttcttccagcactgcc
aggactcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 373
Transcript exons: 6832037-6832340,6832932-6833000
CTGTAACTTTCTCTTTTGCTGGGAGATGAGTCATGCATGCCAAAGCCGGAAGATTTAAATGGAC
TCCCTGAGGCACTTCTTCCAGCACTGCCAGGACTCCTCACAGATTCATCACCAAAATCATATGC
TATTTCACTCTCAGCCACTTGATCACCTCCACTGTAACGCCTTTCTTCCTTGATATGACCATTA
GAGGATGCAACAGGAGACATATCACCATCATCCCAAAGAGATGGCACTTTTCCATTTTCAGCAG
AAACTGGGTTTTCCTGTATTGTACCATTATCCTTAACAATACTAAACCCTTCATCTTCAAATTT
ATCCCAGTCTTCATCCCACTCAATGAGTCCCTCTTGTGGCCCAGGTTCCCAAC

Genomic sequence CTGTAACTTTCTCTTTTGCTGGGAGATGAGTCATGCATGCCAAAGCCGGAAGATTTAAATGGAC
TCCCTGAGGCACTTCTTCCAGCACTGCCAGGACTCCTCACAGATTCATCACCAAAATCATATGC
TATTTCACTCTCAGCCACTTGATCACCTCCACTGTAACGCCTTTCTTCCTTGATATGACCATTA
GAGGATGCAACAGGAGACATATCACCATCATCCCAAAGAGATGGCACTTTTCCATTTTCAGCAG
AAACTGGGTTTTCCTGTATTGTACCATTATCCTTAACAATACTAAACCCTGTCATGTCATATGA
TTCAATAAGGAATACGATGTGATAAATTGGAAATGAAAGGGAAAAAATTGCCCCAAGTGTAAGA
CACAAAATTAACAATAGCTCATGTCATCAAAATCTATGTACAGTATATCACACAAACAATGTTC
TAACAACAGAAGGTTCACTAGAACAGAGGCGGGGGCTTGGTATGTTCAATGAAAGGAACCTAAA
CAAGGATATCATAGCAGAAAAATTATCTCCATAAATGGCACTAATAAATAATATCAGCTACACA
AATATCAAGCTTAGAAACAGTCAAGGTTGCTTATTTCAGGATATGGCTTTGCTAGTATACGTTA
ACACGTGTAAAAGGTATGAAATCTTTTGTCTCTTTCACAGATTAGTTACTAGTATTGAATTTCT
TAAAACACACAGTAGTAAAGTCACAAATATTTTTTAAAACAGTAGCATGGCAAACACTGGATTG
CAAAACTCAGCTTGCAACCATGCAGAGTACTCCGATATATAAACAGACAATTGCCAGCTTTAAA
AAGTAACCAGACTTCAGGGATGCTTGAGTAATAGCAGAGGAGAATGCAGTGGAAGTATTTAACC
TTCATCTTCAAATTTATCCCAGTCTTCATCCCACTCAATGAGTCCCTCTTGTGGCCCAGGTTCC
CAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.1874655
Functional Information
Coding potential Y
Potential coding position 6832220-6832091(+)
6832072-6832969(-)
6832250-6832969(-)
Potential amino acid sequence MTIRGCNRRHITIIPKRWHFSIFSRNWVFLYCTIILNNTKPFIFKFIPVFIPLNESLLWPRFPT
CNFLFCWEMSHACQSRKI*(+)
MTHLPAKEKVTGWEPGPQEGLIEWDEDWDKFEDEGFSIVKDNGTIQENPVSAENGKVPSLWDDG
DMSPVASSNGHIKEERRYSGGDQVAESEIAYDFGDESVRSPGSAGRSASGSPFKSSGFGMHDSS
PSKRESYRLGTWATRGTH*(-)
MSPVASSNGHIKEERRYSGGDQVAESEIAYDFGDESVRSPGSAGRSASGSPFKSSGFGMHDSSP
SKRESYRLGTWATRGTH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019