Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d006780_circ_g.2 |
| ID in PlantcircBase | zma_circ_001207 |
| Alias | circ2442 |
| Organism | Zea mays |
| Position | chr2: 216493386-216498217 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRCexplor2 |
| Parent gene | Zm00001d006780 |
| Parent gene annotation |
histone deacetylase |
| Parent gene strand | + |
| Alternative splicing | Zm00001d006780_circ_g.1 Zm00001d006780_circ_g.3 Zm00001d006780_circ_g.4 Zm00001d006780_circ_g.5 |
| Support reads | 2 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-CA |
| Number of exons covered | Zm00001d006780_T017:4 Zm00001d006780_T010:4 Zm00001d006780_T018:4 Zm00001d006780_T004:4 Zm00001d006780_T015:4 Zm00001d006780_T006:4 Zm00001d006780_T011:4 Zm00001d006780_T016:4 Zm00001d006780_T013:4 Zm00001d006780_T014:4 Zm00001d006780_T007:4 Zm00001d006780_T003:4 Zm00001d006780_T001:4 Zm00001d006780_T002:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.007019283 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |