Detail information of Zm00001d051980_circ_g.1


General Information
CircRNA Name Zm00001d051980_circ_g.1
ID in PlantcircBase zma_circ_004554
Alias tassel_test_circ_000338
Organism Zea mays
Position chr4: 175829731-175830170  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d051980
Parent gene annotation Clathrin interactor EPSIN 2
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues tassel
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered Zm00001d051980_T005:3
Zm00001d051980_T004:3
Zm00001d051980_T008:3
Zm00001d051980_T002:3
Zm00001d051980_T006:3
Zm00001d051980_T007:2
Zm00001d051980_T003:3
Zm00001d051980_T001:3
Zm00001d051980_T010:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTATTACTTTACCTTGCCAGTTGTTACAAGAAGGAATAGTTTTGACACTCCGTTATTACTTT
ACCTTGCTAGATCCTTGATGCCACAAGCAACGAGCCggaggacgtagagctgggcatataacga
gctagatttcaaaaaaaaaaaagggaaccatgaagaaagtgttcgatcagacggtccgggacct
gtacgtga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGGACGTAGAGCTGGGCATATAACGAGCTAGATTTCAAAAAAAAAAAAGGGAACCATGAAGA
AAGTGTTCGATCAGACGGTCCGGGACCTGTACGTGATCTGCGCGCTGTATTCCTGTCGTTTACC
GCGTGCGATTCCGAGCCGCGTTTGTTTGCTAGCTCTCTGGCTGCATGGATTCACATAGAGATTT
GTTTTCACGTCTTCCCTTCGCAGAAAAAGAGAGGTGAACAAGAAGGTCCTCAAGGTGCCTGGAA
TAGAACAAAAGGTGAGGGATCTGTGCGCTCTGCACCCCTTCTCATCCACGATCATGTTCTTGGG
GGCGTTTGTTTGTTTTCTGTTAGTATTACTTTACCTTGCCAGTTGTTACAAGAAGGAATAGTTT
TGACACTCCGTTATTACTTTACCTTGCTAGATCCTTGATGCCACAAGCAACGAGCC
Conservation Information
Conserved circRNAs NA
PMCS 0.187557443
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018